DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh3 and OPN1LW

DIOPT Version :10

Sequence 1:NP_524411.1 Gene:Rh3 / 42398 FlyBaseID:FBgn0003249 Length:383 Species:Drosophila melanogaster
Sequence 2:NP_064445.2 Gene:OPN1LW / 5956 HGNCID:9936 Length:364 Species:Homo sapiens


Alignment Length:352 Identity:84/352 - (23%)
Similarity:139/352 - (39%) Gaps:51/352 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 WNVPPEELRHIPEHWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILV 97
            :::.|..:.|:...|:                 ||....|:..||||:......|.||.|.|.::
Human    45 YHIAPRWVYHLTSVWM-----------------IFVVTASVFTNGLVLAATMKFKKLRHPLNWIL 92

  Fly    98 INLAFCDFM-MMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITR 161
            :|||..|.. .::.:.|.|.|.....:.|||..|.:.|...|..||....:.|.|:::|:.|:.:
Human    93 VNLAVADLAETVIASTISIVNQVSGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCK 157

  Fly   162 PMEGKMTHGK-AIAMIIFIYMYATPWVVACYTETWGRFVPEGYLTSCTFDYLT-------DNFDT 218
            |........| ||..|.|.:::|..| .|.....|.|:.|.|..|||..|..:       .::..
Human   158 PFGNVRFDAKLAIVGIAFSWIWAAVW-TAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMI 221

  Fly   219 RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRIA 283
            .|.|.|.     :.|..:|...|.|:       ..|:|..||:.. ||      ::.:.||..:.
Human   222 VLMVTCC-----IIPLAIIMLCYLQV-------WLAIRAVAKQQK-ES------ESTQKAEKEVT 267

  Fly   284 KAAITICFLFFCSWTPYGVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRME 348
            :..:.:.|.:...|.||...:...|........|....:||...|.....:|.:|...:.::|  
Human   268 RMVVVMIFAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPVIYVFMNRQFR-- 330

  Fly   349 LQKRCPWLALNEKAPESSAVASTSTTQ 375
               .|......:|..:.|.::|.|.|:
Human   331 ---NCILQLFGKKVDDGSELSSASKTE 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh3NP_524411.1 7tmA_photoreceptors_insect 59..349 CDD:320207 75/298 (25%)
TM helix 1 60..86 CDD:320207 7/25 (28%)
TM helix 2 93..118 CDD:320207 7/25 (28%)
TM helix 3 130..160 CDD:320207 9/29 (31%)
TM helix 4 170..190 CDD:320207 7/20 (35%)
TM helix 5 218..247 CDD:320207 7/28 (25%)
TM helix 6 277..307 CDD:320207 6/29 (21%)
TM helix 7 317..342 CDD:320207 6/24 (25%)
OPN1LWNP_064445.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
7tmA_LWS_opsin 42..333 CDD:320209 78/329 (24%)
TM helix 1 55..81 CDD:320209 8/42 (19%)
TM helix 2 88..115 CDD:320209 8/26 (31%)
TM helix 3 126..156 CDD:320209 9/29 (31%)
TM helix 4 167..189 CDD:320209 8/22 (36%)
TM helix 5 216..246 CDD:320209 7/41 (17%)
TM helix 6 261..291 CDD:320209 6/29 (21%)
TM helix 7 301..326 CDD:320209 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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