DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh3 and rgr

DIOPT Version :10

Sequence 1:NP_524411.1 Gene:Rh3 / 42398 FlyBaseID:FBgn0003249 Length:383 Species:Drosophila melanogaster
Sequence 2:NP_001016013.1 Gene:rgr / 548767 XenbaseID:XB-GENE-1011414 Length:295 Species:Xenopus tropicalis


Alignment Length:305 Identity:83/305 - (27%)
Similarity:141/305 - (46%) Gaps:42/305 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 TYPEP---PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK 110
            :||.|   .|:..:.:||..:...|:.:|.|||.:..|...:.||||||:.:|:||..|..:.:.
 Frog     4 SYPLPEGFTETEVFAIGTTLLVEALLGLLLNGLTLLSFYKIRELRTPSNLFIISLAVADTGLCLN 68

  Fly   111 TPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFN-VITRPMEGKMTHGKAIA 174
            ..:..::||.:.:..|..||||.|..|....:::..:.|.||:||:: ..||   .|:....|::
 Frog    69 AFVAAFSSFLRYWPYGSEGCQIHGFQGFVAALSSIGSCAAIAWDRYHQYCTR---SKLHWSTAVS 130

  Fly   175 MIIFIYMYATPWVVACYTETWGRFVPEGYLTSCTFDYLTDNFDTRLFVACIF---FFSFVCPTTM 236
            ::.||:.::..| .|.....||.:..|...|.||.||...:   |.:::.:|   ||.|:.|..:
 Frog   131 VVFFIWGFSAFW-SAMPLFGWGEYDYEPLRTCCTLDYSKGD---RNYISYLFTMAFFEFLVPLFI 191

  Fly   237 ITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPYG 301
            :...|..|                          ..|.|::.:||. ..::.:..|.|| |.||.
 Frog   192 LMTAYQSI--------------------------YQKMKKSGQIRF-NTSMPVKSLVFC-WGPYC 228

  Fly   302 VMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYR 346
            ::.......|.|:|:|...||||...|....::.:||.:.:..||
 Frog   229 LLCFYAVIQDATILSPKLRMIPALLAKTSPAVNAYVYGLGNENYR 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh3NP_524411.1 7tmA_photoreceptors_insect 59..349 CDD:320207 79/292 (27%)
TM helix 1 60..86 CDD:320207 8/25 (32%)
TM helix 2 93..118 CDD:320207 6/24 (25%)
TM helix 3 130..160 CDD:320207 10/30 (33%)
TM helix 4 170..190 CDD:320207 4/19 (21%)
TM helix 5 218..247 CDD:320207 8/31 (26%)
TM helix 6 277..307 CDD:320207 8/29 (28%)
TM helix 7 317..342 CDD:320207 8/24 (33%)
rgrNP_001016013.1 7tmA_Retinal_GPR 40..276 CDD:320200 72/269 (27%)
TM helix 2 51..77 CDD:320200 6/25 (24%)
TM helix 3 88..118 CDD:320200 10/29 (34%)
TM helix 4 126..146 CDD:320200 5/20 (25%)
TM helix 5 173..202 CDD:320200 7/54 (13%)
TM helix 6 204..234 CDD:320200 9/31 (29%)
TM helix 7 244..269 CDD:320200 8/24 (33%)

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