Protein Alignment Rh3 and Opn5

DIOPT Version :10

• Sequence 1: NP_524411.1
• Gene: Rh3 / 42398
• FlyBaseID: FBgn0003249
• Length: 383
• Species: Drosophila melanogaster
• Sequence 2: XP_038939470.1
• Gene: Opn5 / 316259
• RGDID: 727869
• Length: 533
• Species: Rattus norvegicus
• Alignment Length: 349
• Identity: 89/349 - (25%)
• Similarity: 150/349 - (42%)
• Gaps: 44/349 - (12%)

  Fly    35 VPPEELRHIPEHWLTYPEPPES-----MNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSN 94
            :|.:|  .:| |:|...:|..|     .:.:.|.......::|..|||.|:::.|..|....|:.
  Rat     8 LPQDE--RLP-HYLRDEDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAE 69

  Fly    95 ILVINLAFCDF-MMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNV 158
            |:.||||.||. :.:|..|..|.:.|...:..|..||:.:|..|.:.|..:..|...::.||:..
  Rat    70 IMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWFGCRWYGWAGFFFGCGSLITMTAVSLDRYLK 134

  Fly   159 ITRPMEG---KMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVPEGYLTSCTFDY--LTDNFDT 218
            |.....|   |..|  |...:..|:.||:.|........ |.:.||.:.||||.|:  ...:...
  Rat   135 ICYLSYGVWLKRKH--AYICLAVIWAYASFWTTMPLVGL-GDYAPEPFGTSCTLDWWLAQASGGG 196

  Fly   219 RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM-------------------NV 264
            ::|:..|.||..:.||.:|.:.|::|:..|.|..|.:.....::                   :.
  Rat   197 QVFILSILFFCLLLPTAVIVFSYAKIIAKVKSSSKEVAHFDSRIHSSHVLEVKLTKGLVRADSSP 261

  Fly   265 ESLRSNVDKNKE--------TAEIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTLLTPGATM 321
            |||..:|....|        .:..|::..|:.||..|..:|.||.|:|:..|||....:....::
  Rat   262 ESLPRSVFSTAEPINCHVLSISHSRVSTVAMLICAGFLIAWIPYAVVSVWSAFGRPNSIPIQLSV 326

  Fly   322 IPACACKMVACIDPFVYAISHPRY 345
            :|....|..|..:|.:|.:...|:
  Rat   327 VPTLLAKSAAMYNPIIYQVIDYRF 350

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh3	NP_524411.1	7tmA_photoreceptors_insect	59..349	CDD:320207	82/320 (26%)
		TM helix 1	60..86	CDD:320207	7/25 (28%)
		TM helix 2	93..118	CDD:320207	10/25 (40%)
		TM helix 3	130..160	CDD:320207	7/29 (24%)
		TM helix 4	170..190	CDD:320207	5/19 (26%)
		TM helix 5	218..247	CDD:320207	9/28 (32%)
		TM helix 6	277..307	CDD:320207	10/29 (34%)
		TM helix 7	317..342	CDD:320207	5/24 (21%)
Opn5	XP_038939470.1	7tmA_Opsin5_neuropsin	34..353	CDD:320202	82/320 (26%)
		TM helix 1	35..61	CDD:320202	7/25 (28%)
		TM helix 2	68..95	CDD:320202	10/26 (38%)
		TM helix 3	106..136	CDD:320202	7/29 (24%)
		TM helix 4	149..167	CDD:320202	5/17 (29%)
		TM helix 5	196..226	CDD:320202	9/29 (31%)
		TM helix 6	245..312	CDD:320202	15/66 (23%)
		TM helix 7	322..347	CDD:320202	5/24 (21%)