Protein Alignment Rh3 and Opn1sw

DIOPT Version :10

• Sequence 1: NP_524411.1
• Gene: Rh3 / 42398
• FlyBaseID: FBgn0003249
• Length: 383
• Species: Drosophila melanogaster
• Sequence 2: NP_031564.1
• Gene: Opn1sw / 12057
• MGIID: 99438
• Length: 346
• Species: Mus musculus
• Alignment Length: 346
• Identity: 81/346 - (23%)
• Similarity: 145/346 - (41%)
• Gaps: 55/346 - (15%)

  Fly    53 PPESMNYLLGTLYIFFTLMSMLG---------NGLVIWVFSAAKSLRTPSNILVINLAFCDFMMM 108
            |.:...|.|..::.|....:.:|         |.:|:......|.||.|.|.:::|::...|:..
Mouse    18 PWDGPQYHLAPVWAFRLQAAFMGFVFFVGTPLNAIVLVATLHYKKLRQPLNYILVNVSLGGFLFC 82

  Fly   109 VKTPIFIYNSFHQGYAL-GHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEGKMTHGKA 172
            :.:...::.:...||.| |...|.:...:||..|:..|.:.||:|::|:.||.:|......:.|.
Mouse    83 IFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLVTGWSLAFLAFERYVVICKPFGSIRFNSKH 147

  Fly   173 IAMIIFIYMYATPWVVACYTET-----WGRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFSF 230
            ..|::.    || |::......     |.||:|||...||..|:.|  ..:.:..:...:|.|.|
Mouse   148 ALMVVL----AT-WIIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSEYYTWFLFIFCF 207

  Fly   231 VCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFC 295
            :.|.::|.:.|||::       :.||..|.:.. ||..:      :.||..::...:.:...|..
Mouse   208 IIPLSLICFSYSQLL-------RTLRAVAAQQQ-ESATT------QKAEREVSHMVVVMVGSFCL 258

  Fly   296 SWTPYGVMSLIGAFG-----DKTLLTPGATMIPACACKMVACIDPFVYAISHPRYR---MELQKR 352
            .:.||..:::.....     |..|:|     |||...|.....:|.:|...:.::|   :|:..|
Mouse   259 CYVPYAALAMYMVNNRNHGLDLRLVT-----IPAFFSKSSCVYNPIIYCFMNKQFRACILEMVCR 318

  Fly   353 CPWLALNEKAPESSAVASTST 373
            .|      .|.||....|..|
Mouse   319 KP------MADESDVSGSQKT 333

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh3	NP_524411.1	7tmA_photoreceptors_insect	59..349	CDD:320207	72/314 (23%)
		TM helix 1	60..86	CDD:320207	5/34 (15%)
		TM helix 2	93..118	CDD:320207	3/24 (13%)
		TM helix 3	130..160	CDD:320207	10/29 (34%)
		TM helix 4	170..190	CDD:320207	5/19 (26%)
		TM helix 5	218..247	CDD:320207	8/28 (29%)
		TM helix 6	277..307	CDD:320207	5/29 (17%)
		TM helix 7	317..342	CDD:320207	6/24 (25%)
Opn1sw	NP_031564.1	7tmA_SWS1_opsin	34..312	CDD:320204	69/301 (23%)
		TM helix 1	34..60	CDD:320204	3/25 (12%)
		TM helix 2	67..94	CDD:320204	3/26 (12%)
		TM helix 3	105..135	CDD:320204	10/29 (34%)
		TM helix 4	146..168	CDD:320204	5/26 (19%)
		TM helix 5	195..225	CDD:320204	8/36 (22%)
		TM helix 6	240..270	CDD:320204	5/29 (17%)
		TM helix 7	280..305	CDD:320204	8/29 (28%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	324..346		4/10 (40%)