Protein Alignment Rh3 and opn4

DIOPT Version :10

• Sequence 1: NP_524411.1
• Gene: Rh3 / 42398
• FlyBaseID: FBgn0003249
• Length: 383
• Species: Drosophila melanogaster
• Sequence 2: XP_002937616.1
• Gene: opn4 / 100491785
• XenbaseID: XB-GENE-484582
• Length: 592
• Species: Xenopus tropicalis
• Alignment Length: 380
• Identity: 122/380 - (32%)
• Similarity: 198/380 - (52%)
• Gaps: 40/380 - (10%)

  Fly    30 LLGWN-----------VPPEELRHIPEHWL--TYP--EPPESMNYLLGTLYIFFTLMSMLGNGLV 79
            |..||           :||......|::.:  .||  :.|:.::|::|.:.:...:..||||.||
 Frog    26 LNSWNNSEVNSYKLVELPPIVTTETPQYEIHHVYPTVDVPDHVHYVVGAVILAVGITGMLGNFLV 90

  Fly    80 IWVFSAAKSLRTPSNILVINLAFCDFMMMV-KTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIA 143
            |:.|..::|||:|:|:.:||||..||:|.| :.|:|...|.|:.:..|..||:::...|:..||.
 Frog    91 IYAFCRSRSLRSPANMFIINLAITDFLMSVTQAPVFFATSLHKRWIFGEKGCELYAFCGALFGIT 155

  Fly   144 AGATNAFIAYDRFNVITRPME--GKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVPEGYLTS 206
            :..|...||.||:.|||||:.  |.|:..:|:.::..:::|:..|.:..:. .|..:||||.|||
 Frog   156 SMITLMVIALDRYFVITRPLTSIGVMSKKRAVLILSGVWLYSLAWSLPPFF-GWSAYVPEGLLTS 219

  Fly   207 CTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNV 271
            ||:||:|.....|.:...:|.|.|..|..:|.|.|..|.       ||:    |..|....:...
 Frog   220 CTWDYMTFTPSVRAYTMLLFCFVFFIPLFIIIYCYIFIF-------KAI----KNTNRAVQKIGT 273

  Fly   272 DKNKET--------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTLLTPGATMIPACACK 328
            |.|||:        .|.::||.|:.:..|:..||:||..::|:...|..::|||....:||...|
 Frog   274 DDNKESHKQYQKMKNEWKMAKIALIVILLYVVSWSPYSTVALVAFAGYASVLTPYMNSVPAVIAK 338

  Fly   329 MVACIDPFVYAISHPRYRMELQKRCPWLA--LNEKAPESSAVASTSTTQEPQQTT 381
            ..|..:|.:|||:||:|||.:.|..|.|.  |..|..:|.:.:|..:::....|:
 Frog   339 ASAIHNPIIYAITHPKYRMAIAKYIPCLGSLLRVKRRDSRSYSSYPSSRRSTVTS 393

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh3	NP_524411.1	7tmA_photoreceptors_insect	59..349	CDD:320207	105/300 (35%)
		TM helix 1	60..86	CDD:320207	9/25 (36%)
		TM helix 2	93..118	CDD:320207	11/25 (44%)
		TM helix 3	130..160	CDD:320207	10/29 (34%)
		TM helix 4	170..190	CDD:320207	3/19 (16%)
		TM helix 5	218..247	CDD:320207	9/28 (32%)
		TM helix 6	277..307	CDD:320207	10/37 (27%)
		TM helix 7	317..342	CDD:320207	9/24 (38%)
opn4	XP_002937616.1	7tmA_Melanopsin	70..359	CDD:320458	105/300 (35%)
		TM helix 1	71..97	CDD:320458	9/25 (36%)
		TM helix 2	104..130	CDD:320458	11/25 (44%)
		TM helix 3	142..172	CDD:320458	10/29 (34%)
		TM helix 4	184..206	CDD:320458	3/21 (14%)
		TM helix 5	231..261	CDD:320458	10/36 (28%)
		TM helix 6	287..317	CDD:320458	10/29 (34%)
		TM helix 7	327..352	CDD:320458	9/24 (38%)