DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh3 and tmtopn3

DIOPT Version :10

Sequence 1:NP_524411.1 Gene:Rh3 / 42398 FlyBaseID:FBgn0003249 Length:383 Species:Drosophila melanogaster
Sequence 2:XP_002933418.2 Gene:tmtopn3 / 100490931 XenbaseID:XB-GENE-1018917 Length:403 Species:Xenopus tropicalis


Alignment Length:321 Identity:84/321 - (26%)
Similarity:159/321 - (49%) Gaps:37/321 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 IFFTLMSMLG--NGLVIWV-FSAAKSLRTPSNILVINLAFCDFMMMVKTPIFIYNSFHQG-YALG 126
            :|..::..||  |.||:.: |...|.||:|.|:|::|::..|.|:.:....|.:.:..|| :.:|
 Frog    57 VFLGVIGSLGFFNNLVVLILFCQYKVLRSPINMLLMNISLSDLMVCILGTPFSFAASTQGHWLIG 121

  Fly   127 HLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEGKMT-HGKAIAMIIFIYMYATPWVVAC 190
            .:||..:|.:.:..|..:..:.|.::|:|:..:.|..|..:| :.||...|:..::|:..|.:..
 Frog   122 EIGCIWYGFVNTLFGTVSLVSLAVLSYERYCTMLRSTEADLTNYKKAWLGILVSWIYSLVWTLPP 186

  Fly   191 YTETWGRFVPEGYLTSCTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKAL 255
            .. .|.::.|||..|:|:.::.:.:.:...::.|:|.|....|..:|.|.|.::   :|:.::. 
 Frog   187 LF-GWSKYGPEGPGTTCSVNWHSRDANNISYIVCLFIFCLALPFAVIVYCYGRL---LFAIKQV- 246

  Fly   256 RDQAKKMNVESLRSNVDKNKETA---EIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTLLTP 317
                         |.|.|:...|   .:.|....:.:||| .| |.|||||:|:..||...:::|
 Frog   247 -------------SGVSKSSSRAREQRVLIMVIVMVVCFL-LC-WLPYGVMALVATFGKPGIISP 296

  Fly   318 GATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---NEKAPESSAVASTSTTQ 375
            .|::||:...|.....:|.:|...:.::     .|| :.||   |:....||...|:.||:
 Frog   297 SASIIPSVLAKSSTVYNPIIYIFLNKQF-----YRC-FTALIHCNKHPQVSSNKGSSKTTK 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh3NP_524411.1 7tmA_photoreceptors_insect 59..349 CDD:320207 74/290 (26%)
TM helix 1 60..86 CDD:320207 7/22 (32%)
TM helix 2 93..118 CDD:320207 6/24 (25%)
TM helix 3 130..160 CDD:320207 6/29 (21%)
TM helix 4 170..190 CDD:320207 5/19 (26%)
TM helix 5 218..247 CDD:320207 7/28 (25%)
TM helix 6 277..307 CDD:320207 13/32 (41%)
TM helix 7 317..342 CDD:320207 7/24 (29%)
tmtopn3XP_002933418.2 7tmA_tmt_opsin 53..328 CDD:320214 76/296 (26%)
TM helix 1 54..80 CDD:320214 7/22 (32%)
TM helix 2 87..113 CDD:320214 6/25 (24%)
TM helix 3 125..155 CDD:320214 6/29 (21%)
TM helix 4 166..188 CDD:320214 5/21 (24%)
TM helix 5 213..243 CDD:320214 8/32 (25%)
TM helix 6 256..286 CDD:320214 13/31 (42%)
TM helix 7 296..321 CDD:320214 7/24 (29%)

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