DRSC/TRiP Functional Genomics Resources

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Protein Alignment mdlc and rnf113a

DIOPT Version :9

Sequence 1:NP_650865.1 Gene:mdlc / 42397 FlyBaseID:FBgn0038772 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001004536.1 Gene:rnf113a / 446116 ZFINID:ZDB-GENE-040825-1 Length:321 Species:Danio rerio


Alignment Length:339 Identity:194/339 - (57%)
Similarity:236/339 - (69%) Gaps:27/339 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SEEAAS-TSSFGFKKRNLKKGAGIRRKKETSSDESAKSSDEETKGKASALVRAENRRKRTNPNFQ 65
            |||... |.:|.|||.|.|..|   ||:..|..:..|||.:|    .||:|| :.:....||..|
Zfish     4 SEEPKKPTCTFIFKKSNKKFSA---RKRNASDSDKEKSSGDE----GSAVVR-KKKSAAVNPMIQ 60

  Fly    66 STKTMSKAKRQAGGVGDDGSSSASDDDK----LGIAYKSKREALPSGPQDQGATSINEMDTELDR 126
            .||   |.:|:|      .|||.|:::|    :.:||||.|.|.|.||.|.|||::.|:|||.|:
Zfish    61 KTK---KVEREA------VSSSESEEEKEEKSVTVAYKSTRSAKPEGPDDMGATAVYELDTERDK 116

  Fly   127 DAQAIHARALKINEELEGKADDKIYRGINNYAQYYKKQDTAAGNASSGMVRSGPIRAPAHLRATV 191
            |||||..|:.||.|||.||.|||||||||||.::.|.:|:..|||||||||.||||||.||||||
Zfish   117 DAQAIFERSQKIQEELTGKEDDKIYRGINNYHKFIKPKDSTMGNASSGMVRKGPIRAPEHLRATV 181

  Fly   192 RWDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLEMDHENQRTGDVDSDGDDTKYEIHSD 256
            ||||||||||||||||:|||||||||||||||||.|||:|.:.|..|.|    ..||..||:.||
Zfish   182 RWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELEEGRYG----ANDDENYEVSSD 242

  Fly   257 EETLPFKCHICRQSFVNPVVTKCKHYFCEKCALAQYKKSQRCIICSQQTNGIFNPAKELIAR-LK 320
            :|.|||||.|||:||.||::|||:|||||.|||..|:||:||.:|:|||||:|||||||:|: ||
Zfish   243 DEDLPFKCFICRESFKNPIITKCRHYFCEACALQHYRKSKRCYVCNQQTNGVFNPAKELMAKMLK 307

  Fly   321 TNPMENSDSDEEEE 334
            ....::....|||:
Zfish   308 RQAADDQPPSEEED 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mdlcNP_650865.1 COG5152 <181..320 CDD:227481 99/139 (71%)
zf-CCCH 195..221 CDD:279036 24/25 (96%)
zf-RING_5 263..303 CDD:291308 26/39 (67%)
rnf113aNP_001004536.1 COG5152 23..309 CDD:227481 181/306 (59%)
zf-CCCH 185..211 CDD:279036 24/25 (96%)
zf-C3HC4_3 249..289 CDD:290631 26/39 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586536
Domainoid 1 1.000 170 1.000 Domainoid score I3757
eggNOG 1 0.900 - - E1_COG5152
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H133822
Inparanoid 1 1.050 371 1.000 Inparanoid score I2083
OMA 1 1.010 - - QHG55322
OrthoDB 1 1.010 - - D1420266at2759
OrthoFinder 1 1.000 - - FOG0003160
OrthoInspector 1 1.000 - - oto41082
orthoMCL 1 0.900 - - OOG6_102529
Panther 1 1.100 - - LDO PTHR12930
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2079
SonicParanoid 1 1.000 - - X2126
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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