DRSC/TRiP Functional Genomics Resources

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Protein Alignment mdlc and F40F4.7

DIOPT Version :9

Sequence 1:NP_650865.1 Gene:mdlc / 42397 FlyBaseID:FBgn0038772 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001379902.1 Gene:F40F4.7 / 180614 WormBaseID:WBGene00018238 Length:245 Species:Caenorhabditis elegans


Alignment Length:183 Identity:44/183 - (24%)
Similarity:67/183 - (36%) Gaps:47/183 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 NFQSTKTMSK-AKRQAGGVGDDGSSSASDDDKLGIAYKSKREALPSGPQDQGATSINEMDTELDR 126
            |.:|..|||| ||::|........:|.|:|:|             :.|....|.:...:.|    
 Worm     7 NNESDHTMSKSAKKRAKKQQQQKRASESNDEK-------------NSPTKSDAENTEAVST---- 54

  Fly   127 DAQAIHARALKINEELEGKADDKIYR---GINNYAQYYKKQDTAAGNASSGMVRSGPIRAPAHLR 188
                    ..|:::.:|.:..|::.:   .||.:....|...|.||:   |.|..|.|.....|:
 Worm    55 --------PEKVSDSVEPEKQDQVDQLVPLINKFDVNGKALKTIAGH---GTVHLGEITPHNILQ 108

  Fly   189 -ATVRWDYQPDICKD--YKETGYCG------------FGDSCKFLHDRSDYKA 226
             ..:..|..|....|  |.|..|||            .|..|..:.|.||.|:
 Worm   109 LKKLNEDVFPIAYNDKFYVEARYCGELGRLAYYNDVVVGAVCCRIDDISDEKS 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mdlcNP_650865.1 COG5152 <181..320 CDD:227481 16/61 (26%)
zf-CCCH 195..221 CDD:279036 9/39 (23%)
zf-RING_5 263..303 CDD:291308
F40F4.7NP_001379902.1 RimI <122..245 CDD:223532 12/40 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2079
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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