DRSC/TRiP Functional Genomics Resources

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Protein Alignment mdlc and RNF113B

DIOPT Version :9

Sequence 1:NP_650865.1 Gene:mdlc / 42397 FlyBaseID:FBgn0038772 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_849192.1 Gene:RNF113B / 140432 HGNCID:17267 Length:322 Species:Homo sapiens


Alignment Length:321 Identity:156/321 - (48%)
Similarity:203/321 - (63%) Gaps:21/321 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SEEAASTSSFGFKKRNLKKGAGIRRKK--ETSSDESAKSSDEETKGKASALVRAENRRKRTNPNF 64
            :::|....:|.|||...|..||:|::.  :....||:.|.||   |...|      :..|..|..
Human    11 ADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDE---GDTVA------QPPRVAPRP 66

  Fly    65 QSTKTMSKAKRQAGGVGDDGSSSASDDDKLGIAYKSKREALPSGPQDQGATSINEMDTELDRDAQ 129
            :...:..||..     ||.....|: .:.|.:.|:|.|.|.|.||:|.|||:..|.|||.:....
Human    67 RGLHSWQKAAH-----GDRRGEEAA-PESLDVVYRSTRSAKPVGPEDMGATADFEQDTEKEHHTP 125

  Fly   130 AIHARALKINEELEGKADDKIYRGINNYAQYYKKQDTAAGNASSGMVRSGPIRAPAHLRATVRWD 194
            .|...:.::.|.|.|:..|.|||||::|.:|.|.:||:.||:||||.|.||||||.|||||||||
Human   126 TILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAPGHLRATVRWD 190

  Fly   195 YQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLEMDHENQRTGDVDSDGDDTKYEIHSDEET 259
            |||||||||||||:|||||||||||||||||.||::|.:.|..|.    ...:|..:|:.|:||.
Human   191 YQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRY----CICEDENHEVGSEEEE 251

  Fly   260 LPFKCHICRQSFVNPVVTKCKHYFCEKCALAQYKKSQRCIICSQQTNGIFNPAKELIARLK 320
            :||:|.||||:|.|||||||:|||||.|||..::.:.||.||.|.|.|||||||||:|:|:
Human   252 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mdlcNP_650865.1 COG5152 <181..320 CDD:227481 92/138 (67%)
zf-CCCH 195..221 CDD:279036 24/25 (96%)
zf-RING_5 263..303 CDD:291308 25/39 (64%)
RNF113BNP_849192.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..92 20/82 (24%)
COG5152 <174..313 CDD:227481 95/143 (66%)
zf-CCCH 191..217 CDD:279036 24/25 (96%)
zf-C3HC4_2 256..293 CDD:290634 23/36 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165151986
Domainoid 1 1.000 178 1.000 Domainoid score I3574
eggNOG 1 0.900 - - E1_COG5152
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 369 1.000 Inparanoid score I2145
Isobase 1 0.950 - 0 Normalized mean entropy S1119
OMA 1 1.010 - - QHG55322
OrthoDB 1 1.010 - - D1420266at2759
OrthoFinder 1 1.000 - - FOG0003160
OrthoInspector 1 1.000 - - otm40868
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12930
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2079
SonicParanoid 1 1.000 - - X2126
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.850

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