DRSC/TRiP Functional Genomics Resources

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Protein Alignment Regnase-1 and rege-1

DIOPT Version :9

Sequence 1:NP_650863.3 Gene:Regnase-1 / 42394 FlyBaseID:FBgn0038769 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_491985.4 Gene:rege-1 / 172426 WormBaseID:WBGene00016260 Length:634 Species:Caenorhabditis elegans


Alignment Length:602 Identity:183/602 - (30%)
Similarity:276/602 - (45%) Gaps:169/602 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SCSD------DDESQSPSRTTERQN-----------LEFAKKLGYSEQSIHSALTRLGSEAKQNE 89
            ||.|      ..||..||:..:.|.           :|||.|||||.:.:...|..:|.:::.::
 Worm    85 SCDDISHPSLSRESSDPSKIDDDQTAPMIRYPAPEVVEFATKLGYSTEQLSHVLNTIGVDSRMDD 149

  Fly    90 LLAELIKLTADAPRPAHIGGGGSPSS----MTSTLSSPTGGSNSS-------------------- 130
            :|:||:|:.....:|.:.|..||.:|    |||:.||.:..|:||                    
 Worm   150 VLSELVKMGLPGGKPENSGKSGSRNSPEPIMTSSASSSSASSSSSHRPIRQSVSIATSSPATSSS 214

  Fly   131 ---------GLRHIVIDGSNVALSHGNNLVFSCRGIRICVDWFRQRGHRDITAFVPNWRKEM--A 184
                     .||.:|:||||||:.||...||||.|:|.|:::|.:|||.::..|:|.:|:|.  :
 Worm   215 TPSKYNPDPSLRAVVVDGSNVAMLHGRKEVFSCAGLRECLNYFLERGHPEVLIFIPQYRREQPRS 279

  Fly   185 NNNIADQELLYELEHERYLVFTPSRHLDGKRVSCYDDRFILKLAVETDGIVVSNDNYRDLILESN 249
            ::.|.||.:|.|:  ||::::||||:::|:||.|:|||:||:.|...|.::||||.||||..|:.
 Worm   280 DSPITDQHILQEI--ERHIIYTPSRNVNGRRVVCHDDRYILRTAELKDAVIVSNDEYRDLTRENP 342

  Fly   250 EFRRVVQERLLMYSFVNDIFMPPDDPLGRSGPNLDLFLCSQTQQKMADAQQL-CPYGKKCTYGQK 313
            .:|::|:|||||::||.|.|||||||.||.||.::.||   ::..:..:..| |||.:|||||.|
 Worm   343 AWRKIVEERLLMFTFVEDKFMPPDDPSGRHGPRIESFL---SKVPVVSSNPLVCPYARKCTYGNK 404

  Fly   314 CKFRHHNQAPLLQRLPLQASHSAPLHTNGGQQLVSPGGNNNNVKINSLISREPLGRTKSNTIEQV 378
            |||.|..:|                             |..::.:...:.:|             
 Worm   405 CKFYHPERA-----------------------------NGQHMSVTERLMKE------------- 427

  Fly   379 CQGFSAQMDLSEGAVESSQ----PNRHKKLQRQQ----------------PPPAYRLLVPTYSAP 423
                 .|...|.|||:|.|    .|:|..|.|.|                |.|...:.:|.....
 Worm   428 -----NQQKKSLGAVKSMQYEMFKNKHAALSRTQSLNVVKQLTENMSQLPPTPESPMQMPRQHMQ 487

  Fly   424 LQQ------QQHQAQQQHQQS----------------NSSTNYHHQYL---------TRTPSAPV 457
            |||      |||...|:|..|                |.|...:||.|         .|.|....
 Worm   488 LQQANSAPWQQHTVVQRHGSSPLTPVNRQMNVYPDMYNMSQQQNHQVLPNQHGVIGGQRPPKMTT 552

  Fly   458 TDQGLGLPLPA-----HNFAHLSASDSRINEELHASQQLPREEQRRLLRYHLGSLFPPHQVHAVL 517
            |.....|..|:     |:...:...::..:|.|        .|.|..:.:||.::||...|.:|:
 Worm   553 TVSQTHLFAPSTAVWGHSELSVGPVNTGSDESL--------AEVRSRVHFHLCNIFPHDFVESVM 609

  Fly   518 QLYPEETDAKTICAAIL 534
            ...|||.:|..:|..|:
 Worm   610 AANPEEVNAPVLCELII 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Regnase-1NP_650863.3 RNase_Zc3h12a 131..284 CDD:288804 78/154 (51%)
rege-1NP_491985.4 RNase_Zc3h12a 224..377 CDD:314796 78/154 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166838
Domainoid 1 1.000 173 1.000 Domainoid score I2221
eggNOG 1 0.900 - - E1_KOG3777
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 262 1.000 Inparanoid score I1900
Isobase 1 0.950 - 0 Normalized mean entropy S4990
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D335949at33208
OrthoFinder 1 1.000 - - FOG0003961
OrthoInspector 1 1.000 - - oto20273
orthoMCL 1 0.900 - - OOG6_105231
Panther 1 1.100 - - LDO PTHR12876
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4205
SonicParanoid 1 1.000 - - X1140
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.740

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