DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4936 and znf1003

DIOPT Version :9

Sequence 1:NP_650862.1 Gene:CG4936 / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001104681.1 Gene:znf1003 / 793476 ZFINID:ZDB-GENE-080219-42 Length:336 Species:Danio rerio


Alignment Length:344 Identity:92/344 - (26%)
Similarity:138/344 - (40%) Gaps:108/344 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 EEDGIIEEVYDVYETYEGDLIPDQGYDHEMADQALSELSAEIEYLDQVE------HDQLTESAHE 245
            :||  .||:.||.|  |.:.:.:....|::..:  .|..:|.|:|..::      |:.:......
Zfish    11 QED--TEELIDVKE--ESEELSEDEEKHQVKSE--EETQSEPEHLFSLQTNTNNNHNLMVTKEES 69

  Fly   246 DDAEVDLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKTTDRGNPLKVR 310
            |:..||            .|..|:|.                                    :|:
Zfish    70 DELSVD------------KVHHSVHT------------------------------------EVK 86

  Fly   311 RGNSDSAGSKMSIKSEKDISIGEVLARKHSGIKTKGGHKILLGDKKEFKYICDVCGNMYPSQSRL 375
            ..:....|     ||.|.:|..:...:.|:|               |..|.||.||..:...|.|
Zfish    87 PNSCTLCG-----KSYKQLSHLQQHQKIHTG---------------ERPYTCDQCGKRFRRSSTL 131

  Fly   376 TEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAFADLSTRNK------- 433
            .:|:|:|:|.:||.|:.||..|.:..:|.||:..||..:||.||.|..:|:.||....       
Zfish   132 NQHMKIHTGERPHYCDQCGRTFLRTSELRRHLTVHTNEKPYSCSECGKSFSRLSNLKVHQKIHAG 196

  Fly   434 ---------------------HHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVC 477
                                 |.||||.|:||:|..|.|.|:..::||.|:.|||||||:.|..|
Zfish   197 VKEHVCIECGKSFINAQVLQIHQRIHTGEKPYKCSHCDKRFSLLHSLKSHERIHTGEKPYTCTQC 261

  Fly   478 GKGFPQAYKLRNHRVIHER 496
            ||.|..:.:||.|.:||.|
Zfish   262 GKSFKNSSQLRQHMMIHTR 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4936NP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 8/19 (42%)
zf-H2C2_2 375..399 CDD:290200 11/23 (48%)
COG5048 386..>447 CDD:227381 27/88 (31%)
C2H2 Zn finger 390..410 CDD:275368 7/19 (37%)
zf-H2C2_2 403..426 CDD:290200 10/22 (45%)
C2H2 Zn finger 418..438 CDD:275368 8/47 (17%)
zf-H2C2_2 432..455 CDD:290200 12/50 (24%)
C2H2 Zn finger 446..466 CDD:275368 7/19 (37%)
zf-H2C2_2 459..481 CDD:290200 14/21 (67%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
znf1003NP_001104681.1 COG5048 <36..269 CDD:227381 77/302 (25%)
C2H2 Zn finger 90..110 CDD:275368 5/24 (21%)
zf-H2C2_2 102..127 CDD:290200 8/39 (21%)
C2H2 Zn finger 118..138 CDD:275368 8/19 (42%)
zf-H2C2_2 131..155 CDD:290200 11/23 (48%)
C2H2 Zn finger 146..166 CDD:275368 7/19 (37%)
zf-H2C2_2 158..183 CDD:290200 11/24 (46%)
C2H2 Zn finger 174..194 CDD:275368 6/19 (32%)
C2H2 Zn finger 202..222 CDD:275368 2/19 (11%)
zf-H2C2_2 215..238 CDD:290200 11/22 (50%)
C2H2 Zn finger 230..250 CDD:275368 7/19 (37%)
zf-H2C2_2 242..267 CDD:290200 15/24 (63%)
C2H2 Zn finger 258..278 CDD:275368 8/19 (42%)
C2H2 Zn finger 286..306 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580967
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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