DRSC/TRiP Functional Genomics Resources

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Protein Alignment idc and Zscan25

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001074900.1 Gene:Zscan25 / 666311 MGIID:3647079 Length:543 Species:Mus musculus


Alignment Length:422 Identity:106/422 - (25%)
Similarity:167/422 - (39%) Gaps:91/422 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 VGPVEV--EQRPPEKKG------SETATKLEPDVDPDEAEQE------------PEHDEEDEDVD 141
            :|||||  |...|:.:|      |.|....:...|..:|.||            |.....|::: 
Mouse   153 LGPVEVKPEWGIPQGEGVQSLGPSTTEQLSQGPGDGTQAFQEQALPILHVGPGLPSVSARDQEM- 216

  Fly   142 LDESHYAEADDAAETQG-GVFHDEIEDGILVELEKDRIVHVKNEQVEEDGIIEEVYDVYETYEGD 205
                  |....||.:|| |.|.|     :.:...::...||...|::..|      :..::.:..
Mouse   217 ------AAGFLAATSQGLGPFKD-----MTLGFPEEEWRHVAPAQIDCFG------EYVDSQDCG 264

  Fly   206 LIPDQGYDHEMADQALSELSAEIEYLDQVEHDQLTESAHEDDAEV--DLNSTEEEFVPSKSVRAS 268
            ::|..|...:.|.....:|......|       .::...|.|.::  ...:.|:|          
Mouse   265 VLPGAGSKEKEAKPQQEDLKRAFVGL-------TSDGFGEADIQIPGPGGTCEQE---------- 312

  Fly   269 IHARNATKRRVNPRRSATSTASVAVESSTSKTTDRGNPLKVRRGNSDSAGSKMSI-KSEKDISIG 332
                        |..|.||...:       .....|.||      .|:..:..|. |..:....|
Mouse   313 ------------PGSSGTSLPGL-------PAPQHGVPL------PDTLNTHNSFWKPFQCPECG 352

  Fly   333 EVLARKHSGIKTKGGHKILLGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCF 397
            :..:|..:.::.:..|:    ::|.|.  |..||..:..:..||:|.:.|.|.:|:.|..|...|
Mouse   353 KGFSRSSNLVRHQRTHE----EEKSFG--CVECGKGFTLREYLTKHQRTHLGKRPYVCGECWKTF 411

  Fly   398 AQAQQLARHMNTHTGNRPYKCSYCPAAFADLSTRNKHHRIHTNERPYECDVCHKTFTYTNTLKFH 462
            :|...|..|..:|||.:|||||.|...|:.......|.|.||.|:||.|: |.|:|:....|..|
Mouse   412 SQRHHLEVHQRSHTGEKPYKCSDCWKGFSRRQHLLVHRRTHTGEKPYTCE-CGKSFSRNANLAVH 475

  Fly   463 KMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIH 494
            :..||||||:.|.||||.|.:..:|..|:.||
Mouse   476 RRAHTGEKPYGCQVCGKRFSKGERLVRHQRIH 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 6/19 (32%)
COG5048 386..>447 CDD:227381 24/60 (40%)
C2H2 Zn finger 390..410 CDD:275368 6/19 (32%)
C2H2 Zn finger 418..438 CDD:275368 6/19 (32%)
SFP1 <424..491 CDD:227516 27/66 (41%)
C2H2 Zn finger 446..466 CDD:275368 6/19 (32%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
Zscan25NP_001074900.1 SCAN 38..120 CDD:460417
KRAB_A-box 230..>258 CDD:470626 6/38 (16%)
COG5048 <338..531 CDD:227381 61/177 (34%)
C2H2 Zn finger 348..368 CDD:275368 2/19 (11%)
C2H2 Zn finger 376..396 CDD:275368 6/19 (32%)
C2H2 Zn finger 404..424 CDD:275368 6/19 (32%)
C2H2 Zn finger 432..452 CDD:275368 6/19 (32%)
C2H2 Zn finger 460..479 CDD:275368 6/19 (32%)
C2H2 Zn finger 487..507 CDD:275368 8/19 (42%)
C2H2 Zn finger 515..534 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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