DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment idc and si:rp71-1g18.1

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001104632.2 Gene:si:rp71-1g18.1 / 559922 ZFINID:ZDB-GENE-030131-5470 Length:457 Species:Danio rerio


Alignment Length:329 Identity:97/329 - (29%)
Similarity:136/329 - (41%) Gaps:69/329 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 GDLIPDQGYDHEM------ADQALSELSAE---------------IEYLDQVE-HDQLTESAHED 246
            |:||||..:..::      .:..|..||.|               ...||.:. .|..|::..:.
Zfish   150 GNLIPDAPWTDDLKKTETIQENGLRGLSLEEPSAHSIVDPDSHLFSSVLDSIPIADLSTDTLSQW 214

  Fly   247 DAE-VDLN---STEEEFVPSKSVRASIHARNATKRRVNPRRSATSTAS-VAVESSTSKT------ 300
            |.. ||:|   |.|:...|..| ..|:.....:      :.||:|.|| ..|....::|      
Zfish   215 DLSLVDVNPLPSLEKPEAPHTS-EMSLEDTELS------QASASSAASGKKVRFQLTQTPFDCKL 272

  Fly   301 -----TDRGNPLKVRRGNSDSAGSKMSIKSEKDISIGEVLARKHSGIKTKGGHKILLGDKKEFKY 360
                 ....|.|.|...:..:..||....:.||:       |.|..:.|  |.::..     || 
Zfish   273 LRPCSVQLVNLLMVSSAHKANGSSKKCFSAPKDL-------RTHQRVHT--GRRLCC-----FK- 322

  Fly   361 ICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAF 425
               .|||   ...|| :.:..|.  .||.|:|||..|.:.:.|.||...|||.:||.|..|...|
Zfish   323 ---ECGN---GIWRL-QGVLAHG--HPHACKICGKKFKRKKMLKRHERFHTGEKPYSCRRCKKTF 378

  Fly   426 ADLSTRNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNH 490
            |...:..:|.|.||.|||:.|..|.|.|...|.||.|...||||||::|::|.|||.....|..|
Zfish   379 ALRKSLRRHERFHTGERPHTCPHCRKAFRLKNNLKAHLRFHTGEKPYICNLCSKGFRIRKNLEKH 443

  Fly   491 RVIH 494
            |::|
Zfish   444 RLLH 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 5/19 (26%)
COG5048 386..>447 CDD:227381 26/60 (43%)
C2H2 Zn finger 390..410 CDD:275368 8/19 (42%)
C2H2 Zn finger 418..438 CDD:275368 6/19 (32%)
SFP1 <424..491 CDD:227516 29/66 (44%)
C2H2 Zn finger 446..466 CDD:275368 8/19 (42%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
si:rp71-1g18.1NP_001104632.2 C2H2 Zn finger 343..363 CDD:275368 8/19 (42%)
zf-H2C2_2 358..379 CDD:463886 9/20 (45%)
C2H2 Zn finger 371..391 CDD:275368 6/19 (32%)
zf-H2C2_2 383..406 CDD:463886 10/22 (45%)
SFP1 <393..444 CDD:227516 23/50 (46%)
C2H2 Zn finger 399..419 CDD:275368 8/19 (42%)
C2H2 Zn finger 427..447 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.