DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment idc and znf1162

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_068072387.1 Gene:znf1162 / 503527 ZFINID:ZDB-GENE-050220-5 Length:334 Species:Danio rerio


Alignment Length:320 Identity:92/320 - (28%)
Similarity:134/320 - (41%) Gaps:80/320 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 LDQVEHDQLTESAHEDDAEVDLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVES 295
            :.|.:.::|.....::::| ||:..||:    ..|::....::.|:.|::..|:|         .
Zfish     9 IKQEDTEELIGVMVKEESE-DLSGDEEK----HHVKSEEETQSETEHRISIERTA---------G 59

  Fly   296 STSKTTDRGNPLKVRRGNSDSAGSKMSIKSEKDISIGE-------------------VLARKHSG 341
            .....|..|...|          :|..:|....|..||                   ..||.|:|
Zfish    60 KGFTCTQCGKSFK----------NKHLLKRHVMIHTGEKPYQCSHCDKRFNDSGNLKTHARTHTG 114

  Fly   342 IK--------------------TKGGHKILLGDK-----------------KEFKYICDVCGNMY 369
            .|                    ||..|.::..::                 ||..|.|.|||..:
Zfish   115 EKPYHCTACGKSFTQSSSLRTHTKHNHNLITKEEESEDLSEAKKVNFSVRMKEEPYSCSVCGKSF 179

  Fly   370 PSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAFADLSTRNKH 434
            ..||.|::|..:|:|.|||.|..||..|.|...|.:||..|:|.:|:||..|...|...|....|
Zfish   180 KHQSSLSQHQMIHTGEKPHACIQCGRSFGQLSNLIQHMLIHSGEKPHKCDQCGRTFFRHSHLKNH 244

  Fly   435 HRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIH 494
            ..:||.|:||.|.:|.||||..::|..|:.||||.|.|||..|||.|.||..|:.|:.||
Zfish   245 QSVHTKEKPYSCALCGKTFTRQSSLSLHEKIHTGVKEHVCFECGKTFFQAGYLKRHQRIH 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 8/19 (42%)
COG5048 386..>447 CDD:227381 25/60 (42%)
C2H2 Zn finger 390..410 CDD:275368 8/19 (42%)
C2H2 Zn finger 418..438 CDD:275368 5/19 (26%)
SFP1 <424..491 CDD:227516 31/66 (47%)
C2H2 Zn finger 446..466 CDD:275368 8/19 (42%)
C2H2 Zn finger 474..494 CDD:275368 9/19 (47%)
znf1162XP_068072387.1 COG5048 <62..211 CDD:227381 37/158 (23%)
C2H2 Zn finger 64..84 CDD:275368 5/29 (17%)
C2H2 Zn finger 92..112 CDD:275368 2/19 (11%)
C2H2 Zn finger 120..138 CDD:275368 0/17 (0%)
C2H2 Zn finger 172..192 CDD:275368 8/19 (42%)
C2H2 Zn finger 200..220 CDD:275368 8/19 (42%)
COG5048 224..>272 CDD:227381 19/47 (40%)
C2H2 Zn finger 228..248 CDD:275368 5/19 (26%)
C2H2 Zn finger 256..276 CDD:275368 8/19 (42%)
C2H2 Zn finger 284..304 CDD:275368 9/19 (47%)
zf-H2C2_2 296..320 CDD:463886 4/9 (44%)
C2H2 Zn finger 312..332 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.