DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4936 and CG17802

DIOPT Version :9

Sequence 1:NP_650862.1 Gene:CG4936 / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_650659.2 Gene:CG17802 / 42143 FlyBaseID:FBgn0038549 Length:439 Species:Drosophila melanogaster


Alignment Length:520 Identity:122/520 - (23%)
Similarity:204/520 - (39%) Gaps:113/520 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 CRVC-----LQQPKEPMASIFNDDSEKDLTHMIRECG---GVPIKQFDHYPDKICEKCFKVLKMA 79
            ||:|     .|.|    .:||:::|:     |:|:..   |:.:......|..:|..|...||.|
  Fly     5 CRLCGDLIYTQNP----VNIFDENSK-----MVRQIALVTGLWLTDHSKMPRNMCSCCLLSLKSA 60

  Fly    80 FKFRETCQRSYGHLRQFVGPVEVEQRPPEKKG--------SETATKLEPDVDPDEAEQEPEHD-- 134
            ..||:.|.::...|       .:::|..|.|.        |:....|:  ::..|.|||..::  
  Fly    61 IAFRQACIKTNNRL-------TIQRRSVEAKDDGCWADPLSDAHEGLK--INDAEVEQEVLYEVS 116

  Fly   135 -EEDEDVDLDESHYAEADDAAETQGGVFHDEIEDGILVELEKDRIVHVKNEQVEEDGIIEEVYDV 198
             .::|.::.|...|.:.::.:|.......::|...|....|.|     :.||.:|          
  Fly   117 YADNEGLEEDHDLYKKEEEESEVNENKEFEDIACEIPFSKEDD-----EQEQQQE---------- 166

  Fly   199 YETYEGDLIPDQGYDHEMADQALSELSAEIEYLDQVEHDQLTESAHEDDAEVDLNSTEEEFVPSK 263
               ||..:....|:|.....|...|...:.|...|.|.|:  |.:.|||.|:..|...:....:.
  Fly   167 ---YEDMVDKKTGHDDGEESQECEESQPDEEESQQNEEDE--EESQEDDDELWQNEDGDSDTDAD 226

  Fly   264 SVRASIHA---RNATKRRVNPRRSATSTASVAVESSTSKTTDRGNPLKVRRGNSDSAGSKMSIKS 325
            |: :.|.|   ::|......|||..|..:     |..:..||...|.|.:|              
  Fly   227 SM-SDIEATSRQSALDEDKKPRRKYTKRS-----SPKNDDTDFLKPAKKKR-------------- 271

  Fly   326 EKDISIGEVLARKHSGIKTKGGHKILLGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSGVKPHEC 390
                             ||....|:         :|||.||..:..:.....|:..||||||.||
  Fly   272 -----------------KTYISQKV---------HICDHCGKKFTDKGNFNLHVLRHSGVKPFEC 310

  Fly   391 EICGHCFAQAQQLARHMNT-HTGNRPYKCSYCPAAFADLSTRNKH-HRIHTNERP---YECDVCH 450
            ..||........|..|:.. |.|.:||.|.:|...|...:.|::| :|:|.|::.   ::|:.|.
  Fly   311 PECGQKEFNRYILNIHIRVKHRGEKPYACQFCDERFVHSTMRSRHENRVHRNKKTPKNFKCNYCD 375

  Fly   451 KTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIHERRGQSARESVAGLVSYDTAN 515
            |.:........|:::||||:...|:||...|.:...|:.|  ...|:.|:...:::.....|:.|
  Fly   376 KRYESNYQRAKHEVVHTGERNFHCEVCKVSFTRNSNLKTH--YRSRQHQNKLIAMSAKSEIDSKN 438

  Fly   516  515
              Fly   439  438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4936NP_650862.1 zf-AD 22..95 CDD:214871 21/79 (27%)
C2H2 Zn finger 362..382 CDD:275368 5/19 (26%)
zf-H2C2_2 375..399 CDD:290200 11/23 (48%)
COG5048 386..>447 CDD:227381 20/65 (31%)
C2H2 Zn finger 390..410 CDD:275368 5/20 (25%)
zf-H2C2_2 403..426 CDD:290200 8/23 (35%)
C2H2 Zn finger 418..438 CDD:275368 6/20 (30%)
zf-H2C2_2 432..455 CDD:290200 7/26 (27%)
C2H2 Zn finger 446..466 CDD:275368 4/19 (21%)
zf-H2C2_2 459..481 CDD:290200 8/21 (38%)
C2H2 Zn finger 474..494 CDD:275368 6/19 (32%)
CG17802NP_650659.2 zf-AD 4..74 CDD:285071 20/77 (26%)
C2H2 Zn finger 282..302 CDD:275368 5/19 (26%)
C2H2 Zn finger 310..331 CDD:275368 5/20 (25%)
C2H2 Zn finger 339..360 CDD:275368 6/20 (30%)
C2H2 Zn finger 371..388 CDD:275370 3/16 (19%)
zf-met 398..421 CDD:289631 7/24 (29%)
C2H2 Zn finger 399..417 CDD:275368 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 84 1.000 Inparanoid score I1804
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

Return to query results.
Submit another query.