DRSC/TRiP Functional Genomics Resources

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Protein Alignment idc and Zscan30

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001387689.1 Gene:Zscan30 / 364827 RGDID:1306095 Length:534 Species:Rattus norvegicus


Alignment Length:523 Identity:126/523 - (24%)
Similarity:199/523 - (38%) Gaps:134/523 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IVCRVCLQQPKEPMASIFNDDSEKDLTHMIRECGGVPIKQFDHYPDKICEKCFK----------- 74
            :.||.    ||......|....|||         ||..:.|........::.|:           
  Rat     8 LACRA----PKGQSGLSFVKTEEKD---------GVWKQDFGFQGHLQSQEVFRQQFRQFGYSDF 59

  Fly    75 -----VLKMAFKFRETCQRSYGH----------LRQF--VGPVE----VEQRPPEKKGSETATKL 118
                 .|....||.:...|...|          |.||  :.|:|    |::..| :.|.|..|.|
  Rat    60 TGPRQALNQLQKFCQQWLRPEEHSKEQILELLVLEQFLTILPMELKAWVQEHGP-RNGEEAVTLL 123

  Fly   119 EPDVDPDEAEQEPEHDEEDEDVDLDESHYAEADDAAETQGGVFH------DEIEDGILVELEKDR 177
            |        |.|.|.||....   :.:|..|......|..|:..      ..:|:....||::.:
  Rat   124 E--------ELEREFDEPKHQ---NTAHGQEMICKETTLMGMSESLSSPLQSLENHCKSELQEPQ 177

  Fly   178 IVHVKNE-----QVEEDGIIEEVYDVYETYEGDLIPDQGYDHEMA-DQALSELSAEIEYLDQVEH 236
            :.|.:::     :||::                       |.:|| .:||:.....||.:..|  
  Rat   178 VFHERDKATLPFRVEDE-----------------------DSKMATGKALTAKQEGIECVASV-- 217

  Fly   237 DQLTESAHEDDAEVDLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKTT 301
                  |.|....:     ..|..|.:.|..::...:..|                 :..:..|:
  Rat   218 ------AMESPGRL-----PRETSPVQRVEETMEFLDNEK-----------------QQGSDDTS 254

  Fly   302 DRGNPLKVRRGNSDSAGSKMSIKSEKDI-----SIGEVLARKHSGIKTKGGHKILLGDKKEFKYI 361
            ::.:||..:.|....|.......:|::|     |.|.:....|...:.:       .|..:..|.
  Rat   255 NKTSPLSSQEGGFSLAPFSKKTPTEQNIFEYNESEGILSQNLHGTTQPR-------TDTGKLLYA 312

  Fly   362 CDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAFA 426
            |..||..:.::|:|..|.:.|:|.:|:.|:.||..|.....|.||...|:|.:||||..|..||.
  Rat   313 CMDCGKAFCNRSKLIRHQRSHTGERPYACKECGKAFGFRADLVRHQRIHSGEKPYKCCDCGKAFG 377

  Fly   427 DLSTRNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHR 491
            :.:...:|.||||.|:||.||.|.:.|:..:||..||.||:||||:.|:.||:.|.|:..|..|:
  Rat   378 NNTGLTRHRRIHTGEKPYGCDECGRAFSQCSTLIQHKKIHSGEKPYSCEECGRAFVQSSALIQHK 442

  Fly   492 VIH 494
            .||
  Rat   443 KIH 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871 18/98 (18%)
C2H2 Zn finger 362..382 CDD:275368 6/19 (32%)
COG5048 386..>447 CDD:227381 25/60 (42%)
C2H2 Zn finger 390..410 CDD:275368 7/19 (37%)
C2H2 Zn finger 418..438 CDD:275368 6/19 (32%)
SFP1 <424..491 CDD:227516 30/66 (45%)
C2H2 Zn finger 446..466 CDD:275368 8/19 (42%)
C2H2 Zn finger 474..494 CDD:275368 7/19 (37%)
Zscan30NP_001387689.1 SCAN 44..153 CDD:128708 26/120 (22%)
zf-C2H2 311..333 CDD:395048 7/21 (33%)
C2H2 Zn finger 313..333 CDD:275368 6/19 (32%)
zf-H2C2_2 326..348 CDD:463886 8/21 (38%)
COG5048 <338..525 CDD:227381 48/108 (44%)
C2H2 Zn finger 341..361 CDD:275368 7/19 (37%)
C2H2 Zn finger 369..389 CDD:275368 6/19 (32%)
C2H2 Zn finger 397..417 CDD:275368 8/19 (42%)
C2H2 Zn finger 425..445 CDD:275368 7/19 (37%)
C2H2 Zn finger 453..473 CDD:275368
C2H2 Zn finger 481..501 CDD:275368
C2H2 Zn finger 509..529 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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