DRSC/TRiP Functional Genomics Resources

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Protein Alignment idc and Zscan25

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001102321.1 Gene:Zscan25 / 363872 RGDID:1308619 Length:543 Species:Rattus norvegicus


Alignment Length:273 Identity:79/273 - (28%)
Similarity:119/273 - (43%) Gaps:26/273 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 ESAHEDDAEVDLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKTTDRGN 305
            |..|...|::|...   |:|.|:...|...| .:.::...|::.....|.|.:.|..........
  Rat   242 EWRHVAPAQIDCFG---EYVDSQDCGAPPGA-GSKEKEAKPQQEDLKRAFVGLTSDGFGEAAIQV 302

  Fly   306 PLKVRRGNSDSAGSKMSIKS----EKDISIGEVLARKHSGIKT-------KG--------GHKIL 351
            |:.......:..||..|:..    :..:.:.|.|:...|..|.       ||        .|:..
  Rat   303 PVPGGTCEQEPGGSGTSVPGLPAPQPGVPLPEALSAHSSFWKPFQCPECGKGFSRSSNLVRHQRT 367

  Fly   352 LGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPY 416
            ..::|.|.  |..||..:..:..||:|.:.|.|.:|:.|..|...|:|...|..|..:|||.:||
  Rat   368 HEEEKAFG--CVECGKGFTLREYLTKHQRTHLGKRPYVCGECWKTFSQRHHLEVHQRSHTGEKPY 430

  Fly   417 KCSYCPAAFADLSTRNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGF 481
            ||:.|...|:.......|.|.||.|:||.|: |.|:|:....|..|:..||||||:.|.||||.|
  Rat   431 KCADCWKGFSRRQHLLVHRRTHTGEKPYTCE-CGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRF 494

  Fly   482 PQAYKLRNHRVIH 494
            .:..:|..|:.||
  Rat   495 SKGERLVRHQRIH 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 6/19 (32%)
COG5048 386..>447 CDD:227381 23/60 (38%)
C2H2 Zn finger 390..410 CDD:275368 6/19 (32%)
C2H2 Zn finger 418..438 CDD:275368 5/19 (26%)
SFP1 <424..491 CDD:227516 27/66 (41%)
C2H2 Zn finger 446..466 CDD:275368 6/19 (32%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
Zscan25NP_001102321.1 SCAN 38..120 CDD:460417
KRAB_A-box 230..>258 CDD:470626 5/18 (28%)
COG5048 <337..531 CDD:227381 60/174 (34%)
C2H2 Zn finger 348..368 CDD:275368 3/19 (16%)
C2H2 Zn finger 376..396 CDD:275368 6/19 (32%)
C2H2 Zn finger 404..424 CDD:275368 6/19 (32%)
C2H2 Zn finger 432..452 CDD:275368 5/19 (26%)
C2H2 Zn finger 460..479 CDD:275368 6/19 (32%)
C2H2 Zn finger 487..507 CDD:275368 8/19 (42%)
C2H2 Zn finger 515..534 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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