DRSC/TRiP Functional Genomics Resources

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Protein Alignment idc and si:ch211-276c2.4

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_002664740.1 Gene:si:ch211-276c2.4 / 321704 ZFINID:ZDB-GENE-030131-423 Length:394 Species:Danio rerio


Alignment Length:305 Identity:88/305 - (28%)
Similarity:125/305 - (40%) Gaps:62/305 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 EGDLIPDQGYDHEMADQALSELSAEIEYLDQVEHDQLTESAHEDDAEVDLNSTEEEFVPSKSVRA 267
            |...:.|:....|.|||.|:|     :..|:.:.|:..:...:||.:.|.:..|:|:..||.   
Zfish    14 EQSTVSDEEDIEEQADQELNE-----DEDDEEDEDEDEDDDDDDDDDDDEDEDEDEYYKSKK--- 70

  Fly   268 SIHARNATKRRVNPRRSATSTASVAVESSTSKTTDRGNPLKVRRGNSDSAGSKMSIKSEKDISIG 332
                        .|:              ||||..          .....|     |:.|.||..
Zfish    71 ------------TPK--------------TSKTLH----------TCSQCG-----KNYKHISSL 94

  Fly   333 EVLARKHSGIK------------TKGGHKI-LLGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSG 384
            .:....|:|.|            |..|.|| .:....|..|.|.|||..:.......:|.|.|..
Zfish    95 RIHLLSHTGEKPFHCDQCEKTYSTLSGLKIHQVVHFSERPYSCSVCGRSFSRLDSCKQHQKTHDK 159

  Fly   385 VKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAFADLSTRNKHHRIHTNERPYECDVC 449
            |:.|.|..||..|....||.:|...|:|.:|:|||||..:|.....|..|.||||.|:|:.|..|
Zfish   160 VRDHVCTECGKSFTTFSQLKQHQIIHSGLKPFKCSYCDRSFTQAGNRKSHERIHTGEKPHRCTEC 224

  Fly   450 HKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIH 494
            .:::.....||.|..:|:|||.:||:.|||||.....:|.|..:|
Zfish   225 GRSYKDLTGLKNHMRVHSGEKQYVCEHCGKGFNSVSNMRYHLRVH 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 6/19 (32%)
COG5048 386..>447 CDD:227381 25/60 (42%)
C2H2 Zn finger 390..410 CDD:275368 7/19 (37%)
C2H2 Zn finger 418..438 CDD:275368 8/19 (42%)
SFP1 <424..491 CDD:227516 26/66 (39%)
C2H2 Zn finger 446..466 CDD:275368 5/19 (26%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
si:ch211-276c2.4XP_002664740.1 C2H2 Zn finger 81..101 CDD:275368 5/24 (21%)
COG5048 <90..369 CDD:227381 63/180 (35%)
C2H2 Zn finger 109..129 CDD:275368 4/19 (21%)
C2H2 Zn finger 137..157 CDD:275368 6/19 (32%)
C2H2 Zn finger 165..185 CDD:275368 7/19 (37%)
C2H2 Zn finger 193..213 CDD:275368 8/19 (42%)
C2H2 Zn finger 221..241 CDD:275368 5/19 (26%)
C2H2 Zn finger 249..269 CDD:275368 8/19 (42%)
C2H2 Zn finger 277..297 CDD:275368
C2H2 Zn finger 305..325 CDD:275368
C2H2 Zn finger 333..353 CDD:275368
C2H2 Zn finger 361..381 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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