DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4936 and Zkscan4

DIOPT Version :9

Sequence 1:NP_650862.1 Gene:CG4936 / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_038952138.1 Gene:Zkscan4 / 291164 RGDID:1309004 Length:480 Species:Rattus norvegicus


Alignment Length:352 Identity:104/352 - (29%)
Similarity:158/352 - (44%) Gaps:42/352 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 VHVKNEQVEEDGIIEEVYDVYETYEGDLIPDQGYDHEMADQALSELSAEIEYLDQVEHDQLTESA 243
            :|.| ||:.|..::|:...:   ..|:|   |.:..|....:..|:.|.:||||: :.|:.....
  Rat    84 MHSK-EQILELLVLEQFLTI---LPGEL---QAWVREQHPDSGEEVVALLEYLDR-QLDETPPQV 140

  Fly   244 HEDDAEVDLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKTTDRGNPLK 308
            ...:...:|...:...|.|.....|.|::.......:..:.:...:.:.......|...||.|| 
  Rat   141 PTGEWSRELLCCKVALVTSSQDSQSSHSQAMKSLFKHESQESLECSPLQARGLEMKPETRGLPL- 204

  Fly   309 VRRGNSDSAGSKMSIKSEKDI-SIGE--------VLARKHSGIKTKGGHKILLGDKKEFKYICDV 364
                    |......|.|:.: .:||        ..|.:..| |.:...|...|::   ::.|..
  Rat   205 --------AEEYKEQKPEQTVWFLGEDTVQISTSTEASEQEG-KLQTTQKNATGNR---RFYCHE 257

  Fly   365 CGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAFADLS 429
            ||..:...|.||:|.::|:|.||:|||.||..|..:..|..|...|||.:||:|..|...|:..|
  Rat   258 CGKSFAQSSGLTKHKRIHTGEKPYECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSS 322

  Fly   430 TRNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIH 494
            ...||.|.||.|:|||||.|.||||.:.:|..|..|||||||..|::|||.|.::..|..|:.||
  Rat   323 NLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHKIHTGEKPFQCNLCGKAFRRSSHLLRHQRIH 387

  Fly   495 ERR------------GQSARESVAGLV 509
            ..:            |||...|:..:|
  Rat   388 GDKAAPKLLHGETWEGQSRVASLGDIV 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4936NP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 7/19 (37%)
zf-H2C2_2 375..399 CDD:290200 13/23 (57%)
COG5048 386..>447 CDD:227381 28/60 (47%)
C2H2 Zn finger 390..410 CDD:275368 7/19 (37%)
zf-H2C2_2 403..426 CDD:290200 9/22 (41%)
C2H2 Zn finger 418..438 CDD:275368 7/19 (37%)
zf-H2C2_2 432..455 CDD:290200 15/22 (68%)
C2H2 Zn finger 446..466 CDD:275368 9/19 (47%)
zf-H2C2_2 459..481 CDD:290200 13/21 (62%)
C2H2 Zn finger 474..494 CDD:275368 7/19 (37%)
Zkscan4XP_038952138.1 SCAN 47..156 CDD:128708 18/79 (23%)
zf-C2H2 253..275 CDD:395048 7/21 (33%)
C2H2 Zn finger 255..275 CDD:275368 7/19 (37%)
zf-H2C2_2 268..290 CDD:404364 12/21 (57%)
zf-C2H2 281..303 CDD:395048 8/21 (38%)
C2H2 Zn finger 283..303 CDD:275368 7/19 (37%)
COG5048 <307..471 CDD:227381 45/108 (42%)
C2H2 Zn finger 311..331 CDD:275368 7/19 (37%)
C2H2 Zn finger 339..359 CDD:275368 9/19 (47%)
C2H2 Zn finger 367..387 CDD:275368 7/19 (37%)
C2H2 Zn finger 422..442 CDD:275368
C2H2 Zn finger 450..470 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 139 1.000 Inparanoid score I4420
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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