DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment idc and Zscan4c

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001013787.1 Gene:Zscan4c / 245109 MGIID:2685243 Length:506 Species:Mus musculus


Alignment Length:384 Identity:87/384 - (22%)
Similarity:131/384 - (34%) Gaps:118/384 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 EAEQEPEHDEEDEDVDLDE----------SHYAEADDAAETQGGVFHDEIEDGILVELEKDRIVH 180
            :.||.|||:|.:.......          ||:.:...|..|         .|..:.|..||    
Mouse   214 QKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTT---------ADVPMEEQPKD---- 265

  Fly   181 VKNEQVEEDGIIEEVYDVYET--------YEGDLIPDQGYDHEMADQALSELSAEIEYLDQVEHD 237
                 :..:.|.|:..:.|.|        |.||.||....|....::.:.....|:         
Mouse   266 -----LSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEV--------- 316

  Fly   238 QLTESAHEDDAEVDLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKTTD 302
                      .::...      ||..|.|||               ..|||   .::.|..:...
Mouse   317 ----------GDIPYG------VPQDSTRAS---------------QGTST---CLQESLGECFS 347

  Fly   303 RGNPLKVRRGNSDSAGSKMSIKSEKDISIGEVLARKHSGIKTKGGHKILLGDKKEFKYICDVCGN 367
            ..:|.:|         ..:..:.|:.||                 ..:|||...|....|:    
Mouse   348 ENDPREV---------PGLQSRQEQPIS-----------------DPVLLGKNHEANLPCE---- 382

  Fly   368 MYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNR-PYKCSYCPAAFADLSTR 431
              ..|.|.....|:      ::||.|...|..|:.|:.|..||...: ...|..|...|..:|.|
Mouse   383 --SHQKRFCRDAKL------YKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDR 439

  Fly   432 NKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNH 490
            ..|..||..|:|::|..|.|:|::...||.|:||||||.|:||.:|.:.|.|:.....|
Mouse   440 RTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRH 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 4/19 (21%)
COG5048 386..>447 CDD:227381 19/61 (31%)
C2H2 Zn finger 390..410 CDD:275368 7/19 (37%)
C2H2 Zn finger 418..438 CDD:275368 6/19 (32%)
SFP1 <424..491 CDD:227516 28/67 (42%)
C2H2 Zn finger 446..466 CDD:275368 8/19 (42%)
C2H2 Zn finger 474..494 CDD:275368 5/17 (29%)
Zscan4cNP_001013787.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
SCAN <51..117 CDD:153421
zf-C2H2 395..417 CDD:395048 7/21 (33%)
C2H2 Zn finger 397..417 CDD:275368 7/19 (37%)
C2H2 Zn finger 426..446 CDD:275368 6/19 (32%)
zf-C2H2 452..474 CDD:395048 8/21 (38%)
C2H2 Zn finger 454..474 CDD:275368 8/19 (42%)
zf-H2C2_2 466..491 CDD:463886 14/24 (58%)
C2H2 Zn finger 482..500 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.