DRSC/TRiP Functional Genomics Resources

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Protein Alignment idc and Zkscan2

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001074798.1 Gene:Zkscan2 / 210162 MGIID:2444060 Length:960 Species:Mus musculus


Alignment Length:591 Identity:139/591 - (23%)
Similarity:220/591 - (37%) Gaps:177/591 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 IRECGGVPIKQFDHYPDKICEKCFKVLKMAFKFRETCQRSY-----GHLRQ----------FVGP 99
            :||||      |...|:: |...||.|          |:||     ||:.:          .:.|
Mouse   375 LRECG------FLRTPEQ-CRTKFKSL----------QKSYRKVRNGHMLEPCAFFEDMDALLNP 422

  Fly   100 ---VEVEQRP------PEKKGSETATKLEPDVDPDEAEQEPEHDE-------------------- 135
               ....:||      |.|:.:.:|.:....|:.:|..::.:.||                    
Mouse   423 AAHTSSTERPKVVISLPLKRTAISAKEQVSLVEEEEGAEDSDGDEVGIEFIRKSEIRAAPVLFQN 487

  Fly   136 --------EDEDVDLD---ESHYAEADDAAETQGGVF---------------------------- 161
                    |:....||   |:.:.||..|...:..::                            
Mouse   488 LSGVHWGYEETKTFLDILQETRFYEALQACHRKSKLYGVVAEQLRECGFLRTPEQCRTKFKSLQK 552

  Fly   162 -HDEIEDGILVE-----LEKDRIVHVK--------NEQV-----EEDGIIE------EVYDVYET 201
             :.::::|.::|     .|.|.:|:.:        :|:|     :|.|.||      ..::..||
Mouse   553 SYRKVKNGHVLESCAFYKEMDALVNCRPSSLSTNTSEEVPSLSRQERGHIEVEPREPTTWEPVET 617

  Fly   202 YEGDLIPDQGYDHEMADQALSELSAEIEYLDQVEHD------------QLTESAHEDDAEVDLNS 254
            .:..::.|.|          ||..:|.|.:::.|.:            ::.....||..:|....
Mouse   618 PQEAVLEDSG----------SERLSEEEMIEEPELEGPSGLLQSPAGFEIGTIIKEDPTQVMFKD 672

  Fly   255 TEEEFV----PSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKTTDRG------NPLKV 309
            ||...|    |.:.|..:.:.....||.....|...:...|......|:..|.|      .|...
Mouse   673 TEPHRVLMEKPKRLVSQNTNPSKYCKREYFSGRHCENLQGVRQGKLMSQPRDTGKAVVHQRPCVG 737

  Fly   310 RR-----------GNSDSAGSKMSIKSEKDIS---IGEVLARKHSGIKTKGGHKILLGDKKEFKY 360
            ||           |.|.....:|:.:.|....   .|:...|..|.|:    |:.:...:|.|| 
Mouse   738 RRPYRLLKYGENFGRSARLVCRMTHQKENPFKCGVCGKCFGRSRSLIR----HQRIHTGEKPFK- 797

  Fly   361 ICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAF 425
             |..||..:...|....|.:||:|.||:.|..||.||:|:..|..|..||||.:||:|..|..:|
Mouse   798 -CPDCGKSFNDSSNFGAHQRVHTGEKPYRCRECGKCFSQSSSLIIHQRTHTGEKPYQCEECGKSF 861

  Fly   426 ADLSTRNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNH 490
            .:.|..:.|.||||.|.||:|..|.|:|......:.|:.||.||||:.|..|||.|.::..|..|
Mouse   862 TNSSHFSAHRRIHTEENPYKCGDCEKSFNNCARFREHQRIHNGEKPYTCAQCGKHFNKSSFLTKH 926

  Fly   491 RVIHER 496
            |.:|.|
Mouse   927 REVHMR 932

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871 15/49 (31%)
C2H2 Zn finger 362..382 CDD:275368 5/19 (26%)
COG5048 386..>447 CDD:227381 28/60 (47%)
C2H2 Zn finger 390..410 CDD:275368 8/19 (42%)
C2H2 Zn finger 418..438 CDD:275368 6/19 (32%)
SFP1 <424..491 CDD:227516 27/66 (41%)
C2H2 Zn finger 446..466 CDD:275368 5/19 (26%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
Zkscan2NP_001074798.1 C2H2 Zn finger 882..902 CDD:275368 5/19 (26%)
C2H2 Zn finger 910..930 CDD:275368 8/19 (42%)
SCAN 42..148 CDD:128708
KRAB <241..282 CDD:214630
Myb_DNA-bind_4 334..415 CDD:463994 15/56 (27%)
Myb_DNA-bind_4 490..571 CDD:463994 9/80 (11%)
COG5048 <766..915 CDD:227381 57/154 (37%)
C2H2 Zn finger 770..790 CDD:275368 5/23 (22%)
C2H2 Zn finger 798..818 CDD:275368 5/19 (26%)
C2H2 Zn finger 826..846 CDD:275368 8/19 (42%)
C2H2 Zn finger 854..874 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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