DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4936 and klf-3

DIOPT Version :9

Sequence 1:NP_650862.1 Gene:CG4936 / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001022205.1 Gene:klf-3 / 191713 WormBaseID:WBGene00003480 Length:315 Species:Caenorhabditis elegans


Alignment Length:253 Identity:67/253 - (26%)
Similarity:93/253 - (36%) Gaps:61/253 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 YETYEGDLIPD----QGYDHEMADQALSELSAEIEYLDQVEHDQLTESAHEDDAEVDLNSTEEEF 259
            ||||.....|.    ..||.............|:..:..|....:|...|:  .|...:|.|..|
 Worm   104 YETYPEVYYPPHIICNPYDVPTTSDRNPPYYTEVTTVSAVTLHSMTPPTHK--IETPPSSPENSF 166

  Fly   260 VPSKSVRASIHARNATKRRV--NP---RRSATSTASVAVESSTSKTTDRGNPLKVRRGNSDSAGS 319
            .|..|...:|      |..:  :|   .....||.|    |.:|.|:...:||:          .
 Worm   167 GPLASQLPAI------KMEIPMHPLPHNGELDSTRS----SPSSTTSSERSPLQ----------R 211

  Fly   320 KMSIKSEKDISIGEVLARKHSGIKTKGGHKILLGDKKEFKYICDV--CGNMYPSQSRLTEHIKVH 382
            |..|:|.|         |..:             |||...:.|..  |...|...|.|..|.:.|
 Worm   212 KSRIESNK---------RNPT-------------DKKFVVHACTYPGCFKKYSKSSHLKAHERTH 254

  Fly   383 SGVKPHEC--EICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAFADLSTRNKHHRIH 438
            ||.||..|  :.|...||::.:|.|||..|||::|::||.|...||    |:.|..:|
 Worm   255 SGEKPFVCKWQNCSWKFARSDELTRHMRKHTGDKPFRCSLCDRNFA----RSDHLSLH 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4936NP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 6/21 (29%)
zf-H2C2_2 375..399 CDD:290200 10/25 (40%)
COG5048 386..>447 CDD:227381 22/55 (40%)
C2H2 Zn finger 390..410 CDD:275368 8/21 (38%)
zf-H2C2_2 403..426 CDD:290200 11/22 (50%)
C2H2 Zn finger 418..438 CDD:275368 7/19 (37%)
zf-H2C2_2 432..455 CDD:290200 2/7 (29%)
C2H2 Zn finger 446..466 CDD:275368
zf-H2C2_2 459..481 CDD:290200
C2H2 Zn finger 474..494 CDD:275368
klf-3NP_001022205.1 C2H2 Zn finger 235..254 CDD:275368 5/18 (28%)
C2H2 Zn finger 262..284 CDD:275368 8/21 (38%)
zf-H2C2_2 276..301 CDD:290200 13/28 (46%)
C2H2 Zn finger 292..312 CDD:275368 8/21 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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