DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4936 and ZNF558

DIOPT Version :9

Sequence 1:NP_650862.1 Gene:CG4936 / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_653294.1 Gene:ZNF558 / 148156 HGNCID:26422 Length:402 Species:Homo sapiens


Alignment Length:185 Identity:68/185 - (36%)
Similarity:100/185 - (54%) Gaps:21/185 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 GIKTKGGHK-ILLGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLA 404
            |:||:..|: :.|.:       |:.|..::.::|.||:|.::|:|.||::|..||..|:....|.
Human   139 GVKTERSHRGVKLNE-------CNQCFKVFSTKSNLTQHKRIHTGEKPYDCSQCGKSFSSRSYLT 196

  Fly   405 RHMNTHTGNRPYKCSYCPAAFADLSTRNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGE 469
            .|...|.|.:||:|::|..||:|.|:...|.||||.|:||||:.|...|..:..||.||.|||||
Human   197 IHKRIHNGEKPYECNHCGKAFSDPSSLRLHLRIHTGEKPYECNQCFHVFRTSCNLKSHKRIHTGE 261

  Fly   470 KPHVCDVCGKGFPQAYKLRNHRVIHERR--------GQSARESVAGLVSYDTANI 516
            ..|.|:.|||.|.....|..|..||...        |::.|:|     ||.|.::
Human   262 NHHECNQCGKAFSTRSSLTGHNSIHTGEKPYECHDCGKTFRKS-----SYLTQHV 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4936NP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 6/19 (32%)
zf-H2C2_2 375..399 CDD:290200 11/23 (48%)
COG5048 386..>447 CDD:227381 27/60 (45%)
C2H2 Zn finger 390..410 CDD:275368 6/19 (32%)
zf-H2C2_2 403..426 CDD:290200 9/22 (41%)
C2H2 Zn finger 418..438 CDD:275368 8/19 (42%)
zf-H2C2_2 432..455 CDD:290200 12/22 (55%)
C2H2 Zn finger 446..466 CDD:275368 7/19 (37%)
zf-H2C2_2 459..481 CDD:290200 14/21 (67%)
C2H2 Zn finger 474..494 CDD:275368 7/19 (37%)
ZNF558NP_653294.1 KRAB 43..100 CDD:214630
C2H2 Zn finger 154..174 CDD:275368 6/19 (32%)
COG5048 <162..398 CDD:227381 61/155 (39%)
C2H2 Zn finger 182..202 CDD:275368 6/19 (32%)
C2H2 Zn finger 210..230 CDD:275368 8/19 (42%)
C2H2 Zn finger 238..258 CDD:275368 7/19 (37%)
C2H2 Zn finger 266..286 CDD:275368 7/19 (37%)
C2H2 Zn finger 294..314 CDD:275368 6/23 (26%)
C2H2 Zn finger 322..342 CDD:275368
C2H2 Zn finger 350..370 CDD:275368
C2H2 Zn finger 378..398 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.