DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment idc and si:ch73-299h12.6

DIOPT Version :10

Sequence 1:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001138292.1 Gene:si:ch73-299h12.6 / 100150691 ZFINID:ZDB-GENE-081031-44 Length:242 Species:Danio rerio


Alignment Length:181 Identity:61/181 - (33%)
Similarity:86/181 - (47%) Gaps:20/181 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 SDSAGSKMSIKSEKDISIGEVLARKHSGIKTKGGHKILLGDKKEFKYICDVCGNMYPSQSRLTEH 378
            :|..|::.|.::|      |....:.:|.|.              .:||..||..|...|.||.|
Zfish    19 TDEVGNEASSQTE------ETFNSRKAGAKG--------------PFICCECGKSYKKNSDLTRH 63

  Fly   379 IKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSYCPAAFADLSTRNKHHRIHTNERP 443
            ::.|:|.:...|..||..:.:..:|..||..|||.|||.||.|..:|...:...:|...||..:|
Zfish    64 MRFHTGERLLTCTECGKSYTEKGKLVSHMRIHTGERPYACSQCGKSFRYKNVLKEHLLSHTRGKP 128

  Fly   444 YECDVCHKTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIH 494
            ..||.|.|||.|.:.|..|..:|:|.|||.|..|||.|.:...||.|:.:|
Zfish   129 LSCDQCDKTFVYASNLSTHLKVHSGLKPHCCSFCGKSFSRLENLRIHQSVH 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
idcNP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 8/19 (42%)
COG5048 386..>447 CDD:227381 20/60 (33%)
C2H2 Zn finger 390..410 CDD:275368 6/19 (32%)
C2H2 Zn finger 418..438 CDD:275368 5/19 (26%)
SFP1 <424..491 CDD:227516 26/66 (39%)
C2H2 Zn finger 446..466 CDD:275368 9/19 (47%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
si:ch73-299h12.6NP_001138292.1 COG5048 <24..198 CDD:227381 59/176 (34%)
C2H2 Zn finger 47..67 CDD:275368 8/19 (42%)
C2H2 Zn finger 75..95 CDD:275368 6/19 (32%)
C2H2 Zn finger 103..123 CDD:275368 5/19 (26%)
C2H2 Zn finger 131..151 CDD:275368 9/19 (47%)
C2H2 Zn finger 159..179 CDD:275368 8/19 (42%)
COG5048 183..>232 CDD:227381
C2H2 Zn finger 187..207 CDD:275368
C2H2 Zn finger 215..235 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.