DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Zkscan3

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_076174.3 Gene:Zkscan3 / 72739 MGIID:1919989 Length:553 Species:Mus musculus


Alignment Length:442 Identity:115/442 - (26%)
Similarity:180/442 - (40%) Gaps:109/442 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 NPSEGEELLHDIFSETASTRLDQMLHICAGIP--VSLDDNFPDKMCSKCVRCLRLCYKFRLTCQR 80
            :|..|||::  ...|....:||.       .|  |..||:..:.:|||.|        ...:.|.
Mouse   115 HPDSGEEVV--ALLEYLDRQLDD-------TPPQVPDDDDGQELLCSKAV--------LLTSAQG 162

  Fly    81 SHQHIMD----MLDREASNANAAGEGDLLSIAEDLSVESVLKSWED------YASQLDGGMKVEG 135
            |....|:    :|.:|:          |.|:..::.|..|....||      ..|:|.|.:|:|.
Mouse   163 SESSQMEPVEPLLKQES----------LGSLPSEVRVTHVGHCGEDGVTATRLTSELQGLLKMED 217

  Fly   136 ---------EEDQQHQVITYVVEDGDTDDT-NMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNE 190
                     .|....|:..|  :||..:.: ::..:....|....::..||.|            
Mouse   218 VAPVLSPRWTEQDSSQMNLY--KDGMQEHSGSLVSLDQDMQTKVRDLPRAEEY------------ 268

  Fly   191 NSPEIAQEKGSTGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKNSPKVE 255
                             .::.||:.:.  .|..|....||.|  |..::.|              
Mouse   269 -----------------RDQKPEQTVC--FLGEDTVPIPTGA--EASEQEG-------------- 298

  Fly   256 TFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMN 320
              |.:..:|.......:.|..||..:...:.|::|.:.|:|:||:|||.||:.|:.:..|:.|..
Mouse   299 --KLQAAQKSATGTRRFYCRECGKSFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIHQR 361

  Fly   321 THTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHV 385
            .|||.:||:|..|..||:..|...||.|.||.|:||.||.|.:|||.|.:|..|..|||||||:.
Mouse   362 VHTGEKPYECEECGKAFSHSSDLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQ 426

  Fly   386 CDLCGKGFVKAYKLRLHRETHN-------RRITWRNDAEESTKAEDVKGETP 430
            |::|.|.|.::..|..|:.||.       ....|.:.:...:..|::  |||
Mouse   427 CNMCPKAFRRSSHLLRHQRTHTGDKDFFVPEPYWESQSRVESHWENI--ETP 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 17/70 (24%)
COG5048 <264..411 CDD:227381 60/153 (39%)
C2H2 Zn finger 274..294 CDD:275368 5/19 (26%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
C2H2 Zn finger 358..378 CDD:275368 9/19 (47%)
C2H2 Zn finger 386..406 CDD:275368 6/19 (32%)
Zkscan3NP_076174.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..49
SCAN 47..159 CDD:128708 15/60 (25%)
KRAB 213..267 CDD:214630 9/55 (16%)
zf-C2H2 313..335 CDD:395048 5/21 (24%)
C2H2 Zn finger 315..335 CDD:275368 5/19 (26%)
zf-H2C2_2 328..350 CDD:463886 11/21 (52%)
zf-C2H2 341..363 CDD:395048 8/21 (38%)
C2H2 Zn finger 343..363 CDD:275368 7/19 (37%)
COG5048 <367..514 CDD:227381 44/112 (39%)
C2H2 Zn finger 371..391 CDD:275368 8/19 (42%)
C2H2 Zn finger 399..419 CDD:275368 9/19 (47%)
C2H2 Zn finger 427..447 CDD:275368 6/19 (32%)
C2H2 Zn finger 481..501 CDD:275368
zf-C2H2 507..529 CDD:395048
C2H2 Zn finger 509..529 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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