DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Zkscan6

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_080383.2 Gene:Zkscan6 / 52712 MGIID:1289293 Length:556 Species:Mus musculus


Alignment Length:387 Identity:102/387 - (26%)
Similarity:160/387 - (41%) Gaps:77/387 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 DREASNANAAGEGDLLS--IAEDLSVESVLKSWEDYASQLDGGMKVEGEEDQQ--HQVITYVVED 150
            |....|:::| .|:|||  :.|:..:|..|..   .||||....:.....||:  ..|:..:.|:
Mouse   170 DLPLQNSSSA-TGELLSHGVKEESDMEPELAL---AASQLPARPEERPVRDQELGTAVLPPLQEE 230

  Fly   151 -----GDTDDTNMFDVHDPT--------QPVPNEIEEAETYAEYEEYELL--------------- 187
                 ..|.....:|:...|        ..:.|...:....|||.| ||:               
Mouse   231 QWRHLDSTQKEQYWDLMLETYGKMVSGVAGISNSKPDLTNLAEYGE-ELVGLHLHGAEKMARLPC 294

  Fly   188 ---TNENSPE---IAQEKGSTGTDV----ATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDR--- 239
               ..||..|   :...:.....||    :.|.||:..:::...:|:.......:.||..:.   
Mouse   295 KEDRQENDKENLNLENHRDQGCLDVFCQASGEAPPQTALSDFFGESEPHRFGGDSVPEALENHQG 359

  Fly   240 -------------SGRKPVAYHKNS-----------PKVETFKKKVGRKP-RNKLSTYICDVCGN 279
                         ||::|..:.::|           .|.|..:|...|.| ..||.|  |..||.
Mouse   360 EGTGAHLFPYERGSGKQPGQHIQSSSLGELTALWLEEKREASQKGQARSPMAQKLPT--CRECGK 422

  Fly   280 IYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKT 344
            .:...::|..|.:.|:|.....|.||.:.|:::...|:|..||||.:|.||:||...|:|.|...
Mouse   423 TFYRNSQLVFHQRTHTGETYFHCHICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLR 487

  Fly   345 KHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLRLHRETH 406
            .|.:|||.|:||.|.:|.::|....|...|:.:||||||:.|..|||.|..:..|..|:.:|
Mouse   488 HHEKIHTGEKPYKCPLCEKSFIQRSNFNRHQRVHTGEKPYKCTHCGKQFSWSSSLDKHQRSH 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381 55/144 (38%)
C2H2 Zn finger 274..294 CDD:275368 5/19 (26%)
C2H2 Zn finger 302..322 CDD:275368 6/19 (32%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
Zkscan6NP_080383.2 SCAN 37..144 CDD:128708
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..195 8/25 (32%)
KRAB 229..278 CDD:214630 9/49 (18%)
C2H2 Zn finger 417..437 CDD:275368 5/19 (26%)
COG5048 <428..541 CDD:227381 45/112 (40%)
C2H2 Zn finger 445..465 CDD:275368 6/19 (32%)
C2H2 Zn finger 473..493 CDD:275368 7/19 (37%)
C2H2 Zn finger 501..521 CDD:275368 5/19 (26%)
C2H2 Zn finger 529..549 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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