DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Gli4

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_017450541.1 Gene:Gli4 / 500893 RGDID:1560906 Length:373 Species:Rattus norvegicus


Alignment Length:296 Identity:81/296 - (27%)
Similarity:124/296 - (41%) Gaps:80/296 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 NSPEIAQEKGSTGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRS--------------- 240
            :|||:..:...          |:..:.|::..:.:.:..:..||||...|               
  Rat    47 SSPEVPSQTAD----------PDLRVVEEVESTRDTWLDSECKPEKTQASLNSQSLGDGLASRGR 101

  Fly   241 --------------------------GRKPVA-----YH-----KNSPKVETFKKK---VG---- 262
                                      |.||.:     :|     :.:|..|...||   ||    
  Rat   102 ALRGMSKCADSIDQECSLEQPAGLPPGTKPCSQKRDTWHMVLLPQGAPGTEGSAKKTAEVGSSLS 166

  Fly   263 ---RKPRNK-LSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHT 323
               |:|..: ...:.|:|||..:..::.|.:|.:.|:|.||:.|..||:.|......::|...||
  Rat   167 RDCRQPGPQGTKAHRCEVCGKSFKYKSLLLKHQRIHTGEKPYACHECGKHFGSWWGFMQHHRIHT 231

  Fly   324 GNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDL 388
            |.:||:|.:|..||:..|..|:|.|||..|:||.|..|...|:.|.||..|:.:||||||:||..
  Rat   232 GEKPYECGHCGQAFSHSSHFTQHLRIHNGEKPYKCGECGHAFSQSSNLVRHQRLHTGEKPYVCSQ 296

  Fly   389 CGKGFVKAYKLRLHRETHNRRITWRNDAEESTKAED 424
            |||.|:.:..|..|:..|.        .|:..|.||
  Rat   297 CGKAFIWSSVLIEHQRIHT--------GEKPYKCED 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381 56/147 (38%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
C2H2 Zn finger 302..322 CDD:275368 5/19 (26%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
Gli4XP_017450541.1 COG5048 <2..340 CDD:227381 81/296 (27%)
C2H2 Zn finger 182..202 CDD:275368 6/19 (32%)
C2H2 Zn finger 210..230 CDD:275368 5/19 (26%)
C2H2 Zn finger 238..258 CDD:275368 8/19 (42%)
C2H2 Zn finger 266..286 CDD:275368 7/19 (37%)
C2H2 Zn finger 294..314 CDD:275368 7/19 (37%)
C2H2 Zn finger 322..342 CDD:275368 2/3 (67%)
zf-H2C2_2 334..357 CDD:463886
C2H2 Zn finger 350..370 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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