DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trem and Odj

DIOPT Version :9

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_650661.1 Gene:Odj / 42145 FlyBaseID:FBgn0038551 Length:430 Species:Drosophila melanogaster


Alignment Length:454 Identity:110/454 - (24%)
Similarity:180/454 - (39%) Gaps:97/454 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKTESNEKWVVCRVCLNNPSEGEELL----HDIFSETASTRLDQMLHICAGIPVSLDDNFPDKMC 61
            |.||       ||:|      ||.:.    .:|| |..:.|:...:....|:.:.|::..|..:|
  Fly     1 MSTE-------CRIC------GERIFTPHPKNIF-EKRNHRIRMAIEQITGLEIVLENMLPQHIC 51

  Fly    62 SKCVRCLRLCYKFRLTCQRSHQHIMDMLDREASNANAAGEGDLLSIAEDLSVESVLKSWEDYASQ 126
            :.|:..|.....||..|..:|.::.   .|.:|.|..|.:|. ..::..|| :.:||     ...
  Fly    52 ACCLLDLTQAVAFRQRCLETHANLH---QRISSKAGVASKGS-PEVSPVLS-DPLLK-----REV 106

  Fly   127 LDGGMKVEGEEDQQHQVITYVVEDGD-TDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNE 190
            ||.  .|:.|:|::     .:.:|.| .||...|            :|:.:....|         
  Fly   107 LDD--TVDTEDDKE-----LLDDDKDLMDDDKDF------------LEDEKPILRY--------- 143

  Fly   191 NSPEIAQEKGSTGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKNSPKV- 254
                                ||    |:.|...|::: |....|....:..|.||....:||.. 
  Fly   144 --------------------PP----AKKIRIEDQNF-PNRQSPRVRVKRLRVPVVEKADSPPPP 183

  Fly   255 --ETFKKKVGRKPRNK----LSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQ 313
              |..:|...|:|:.|    :..|:||.||..:...:.:.:|...|...| ..|:.|||.|....
  Fly   184 PREHVRKPRKRRPKPKVDRSIKRYVCDQCGWSFNDHSNMKDHKLRHFEEK-FSCDECGRKFYTMP 247

  Fly   314 QLVRHMNT-HTGNRPYKCNYCPAAFADRSTKTKHHR-IHTKERPYVCDVCSRTFTYSDNLKFHKM 376
            .|..|:.. |.|.:||.|.:|...||:..::.:|.| :|..|..:.|.:|.:.|........|:.
  Fly   248 LLRLHIRVHHKGEKPYVCKFCGMGFANSPSRCRHERQMHANELVHPCKICGKRFNSEKGRLKHEE 312

  Fly   377 IHTGEKP--HVCDLCGKGFVKAYKLRLHRET--HNRRITWR-NDAEESTKAEDVKGETPEFLNE 435
            .|..::|  |:|..|.|.|.:|..|..|..|  |.:|:... |..:|..::|....|.|.::.|
  Fly   313 GHKSDQPDVHICLTCNKEFKEAQFLHRHYSTKYHRKRVNLLVNGPKEEFQSEVDPAEFPGYMEE 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 19/79 (24%)
COG5048 <264..411 CDD:227381 46/156 (29%)
C2H2 Zn finger 274..294 CDD:275368 5/19 (26%)
zf-H2C2_2 287..311 CDD:290200 8/23 (35%)
C2H2 Zn finger 302..322 CDD:275368 7/20 (35%)
zf-H2C2_2 315..338 CDD:290200 8/23 (35%)
C2H2 Zn finger 330..350 CDD:275368 6/20 (30%)
zf-H2C2_2 345..367 CDD:290200 7/22 (32%)
C2H2 Zn finger 358..378 CDD:275368 4/19 (21%)
zf-H2C2_2 370..394 CDD:290200 7/25 (28%)
C2H2 Zn finger 386..406 CDD:275368 8/21 (38%)
OdjNP_650661.1 zf-AD 5..77 CDD:214871 19/81 (23%)
COG5048 <202..343 CDD:227381 41/141 (29%)
C2H2 Zn finger 209..229 CDD:275368 5/19 (26%)
C2H2 Zn finger 236..256 CDD:275368 7/19 (37%)
zf-H2C2_2 249..274 CDD:290200 9/24 (38%)
C2H2 Zn finger 265..283 CDD:275368 5/17 (29%)
C2H2 Zn finger 298..314 CDD:275368 2/15 (13%)
zf-C2H2_jaz 322..347 CDD:288983 9/24 (38%)
C2H2 Zn finger 324..343 CDD:275368 7/18 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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