DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Meics

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster


Alignment Length:549 Identity:132/549 - (24%)
Similarity:205/549 - (37%) Gaps:181/549 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 CRVCLNNPSEGEELLHDIFS-ETASTRLDQMLH-----ICAGIPVSLDDNFPDKMCSKCVRCLRL 70
            ||.|    :|...:|.|:|| |.:...:.:||:     ||.   |..|: .|.|:|..|:...:.
  Fly    21 CRAC----AEHSSILVDLFSKEISDPPIWEMLNSILPEICR---VKRDE-MPQKICPTCLVAAQN 77

  Fly    71 CYKFRLTCQRSHQHIMDMLDREASNANAA------------------GEGDLLSIAEDLSVESVL 117
            .:.||..|::|.|....:|..:.||:|.:                  |..|.|    |.:|..:.
  Fly    78 AFHFRHKCEQSFQFFSQLLQLDKSNSNLSRSHCRRGTMNPLIPFEIVGCEDPL----DTNVTKLD 138

  Fly   118 KSWEDYASQLD---GGMKVEGEEDQQ-HQVITYVVEDGDTDDTNMFDVHDPTQPVPNEIEEAETY 178
            .:..|..:.:|   .|....|:|.:. .:|....:.|..|:|               |:...||:
  Fly   139 ANRPDVKTDIDEPTDGKATNGQESEPLQEVFEITMNDIKTED---------------EVSIQETF 188

  Fly   179 AE-YEEYELLTNENSPEIAQEKGSTGTDVATEEP----------------------------PEE 214
            .: ::|.....|.:|.....::.:.|:....:||                            .::
  Fly   189 EDAFDEENDNNNTDSEREDSDQWTVGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYSTQK 253

  Fly   215 EIAEDILDSDEDYDPTHAKPEKCDRSGRK-------------------------PVAY------- 247
            .:|..:....|..|.  .||..||..||.                         |.||       
  Fly   254 ALARHVAKHKEQGDT--QKPHLCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHGPTLK 316

  Fly   248 -----------HKNSPKVETF----------KKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHM 291
                       ||.....:||          ::..|.:|      |.|..|...:...:.|..|.
  Fly   317 SHMHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERP------YKCPDCPQTFAKNSGLKLHS 375

  Fly   292 KFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPY 356
            :.|...:|.:||:||:||||||.|:.|:..|.|:|.:||..|..:|.::|...||.|.|:..:|:
  Fly   376 RLHKEERPFKCELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPF 440

  Fly   357 VCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGF--------------------------VK 395
            .|:.|.:.|:::.:||.|..|||||||:.||.|||||                          .|
  Fly   441 KCEECGQAFSHNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWHVDNNDRPFKCSQCPK 505

  Fly   396 AY----KLRLHRETHNRRITWRNDAEEST 420
            ||    .||.|.:||      :|..|..|
  Fly   506 AYDTQQSLRGHEKTH------KNPDEPKT 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 24/80 (30%)
COG5048 <264..411 CDD:227381 61/176 (35%)
C2H2 Zn finger 274..294 CDD:275368 4/19 (21%)
C2H2 Zn finger 302..322 CDD:275368 12/19 (63%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
C2H2 Zn finger 358..378 CDD:275368 6/19 (32%)
C2H2 Zn finger 386..406 CDD:275368 13/49 (27%)
MeicsNP_524062.1 zf-AD 20..95 CDD:462262 24/81 (30%)
C2H2 Zn finger 242..262 CDD:275368 1/19 (5%)
C2H2 Zn finger 274..294 CDD:275368 4/19 (21%)
SFP1 <296..374 CDD:227516 13/83 (16%)
COG5048 <299..486 CDD:227381 61/192 (32%)
C2H2 Zn finger 302..322 CDD:275368 3/19 (16%)
C2H2 Zn finger 330..350 CDD:275368 2/19 (11%)
C2H2 Zn finger 358..378 CDD:275368 4/19 (21%)
C2H2 Zn finger 386..406 CDD:275368 12/19 (63%)
COG5048 <395..583 CDD:227381 49/140 (35%)
C2H2 Zn finger 414..434 CDD:275368 7/19 (37%)
C2H2 Zn finger 442..462 CDD:275368 6/19 (32%)
C2H2 Zn finger 470..486 CDD:275368 7/15 (47%)
C2H2 Zn finger 500..520 CDD:275368 6/19 (32%)
C2H2 Zn finger 532..552 CDD:275370
C2H2 Zn finger 559..579 CDD:275370
Blue background indicates that the domain is not in the aligned region.

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