DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Zkscan7

DIOPT Version :9

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001170976.1 Gene:Zkscan7 / 382118 MGIID:3040678 Length:718 Species:Mus musculus


Alignment Length:287 Identity:84/287 - (29%)
Similarity:130/287 - (45%) Gaps:49/287 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 VHDPTQPVPNE-IEEAETYAEYE---EYELLTNENSPEIAQE--KGSTGTD-------VATEEPP 212
            :|  ||..|.| .|..:||....   :::.|.|.:.|....|  :.|..:.       ..|.|.|
Mouse   399 IH--TQEKPYECCESGKTYCHSSHLIQHQRLRNGDKPYKGNECVRASIQSSQLLVHKRTHTGEKP 461

  Fly   213 EEE----------IAEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKNSPKVETFKKKVGRKPRN 267
            :|.          |...:|...:       |..:|:..|:   |::.|...::..:...|.||  
Mouse   462 DESGEAFIWNKSLIQHQVLHISK-------KLYECNECGK---AFYTNRNLIDHQRIHTGEKP-- 514

  Fly   268 KLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKCNY 332
                |.|..||..:.....||.|...|:|.|.::|..||:.|:||.||:.|...|||.:|::|:.
Mouse   515 ----YECIECGKSFSRSKCLTRHQSLHTGEKTYKCSECGKAFLQNSQLIDHKRVHTGEKPFECSE 575

  Fly   333 CPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAY 397
            |...|:......:|.|:||.|:||.|..|.::|..:.:|..|:.|||||||:.|:.|||.|..:.
Mouse   576 CGKKFSLGKCLIRHQRLHTGEKPYKCSECGKSFNQNSHLIIHQRIHTGEKPYGCNECGKVFSYSS 640

  Fly   398 KLRLHRETHNRRITWRNDAEESTKAED 424
            .|.:|:.||.        .|:..|.:|
Mouse   641 SLMVHQRTHT--------GEKPYKCKD 659

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381 56/146 (38%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
zf-H2C2_2 287..311 CDD:290200 10/23 (43%)
C2H2 Zn finger 302..322 CDD:275368 9/19 (47%)
zf-H2C2_2 315..338 CDD:290200 8/22 (36%)
C2H2 Zn finger 330..350 CDD:275368 5/19 (26%)
zf-H2C2_2 345..367 CDD:290200 10/21 (48%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
zf-H2C2_2 370..394 CDD:290200 13/23 (57%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
Zkscan7NP_001170976.1 SCAN 46..156 CDD:128708
SCAN 46..133 CDD:280241
COG5048 333..702 CDD:227381 84/287 (29%)
C2H2 Zn finger 352..372 CDD:275368
zf-H2C2_2 368..387 CDD:290200