DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and pita

DIOPT Version :9

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:466 Identity:111/466 - (23%)
Similarity:184/466 - (39%) Gaps:88/466 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKTESNEKWVVCRVCLNNPSEGEELLHDIFSE------TASTRLDQMLHICAGIPVSLDDNFPDK 59
            |.||..    |||.||.     |:.|..||.|      ||:..| |::.|.| |.|...|..|..
  Fly    11 MLTEKR----VCRFCLT-----EQKLASIFEENPRVKTTANLPL-QIMAITA-IEVYAGDGMPGH 64

  Fly    60 MCSKCVRCLRLCYKFRLTCQRSHQHIMDM---------LDREASNANAAGEGDLLSIAEDLSVES 115
            :|.:|......||:|:..|:|:...:...         |::..:.........||.:....:..|
  Fly    65 ICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPS 129

  Fly   116 -----VLKSWEDYASQ--------LDGGM----KVEGEEDQQHQVITYVVEDGDTDDTNMFDVHD 163
                 :|.:....:||        |:..|    .|.|......:...|.::..:..:.:|.||..
  Fly   130 ETPKKLLNTMAKSSSQVIIEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQS 194

  Fly   164 PTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQE-------KGSTG---TDVATEEPPEEE--- 215
            ..:.:.:|:|:     |:.:.....:...|::..:       ||...   ..:||.:...::   
  Fly   195 MLEDMASELEK-----EFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGN 254

  Fly   216 --IAEDILDSD---EDYDPTHAKPEK----------CDRSGRKPVAYHKNSPKVETFKKKVGRKP 265
              |..::||||   :|.|......||          |:||          .|..:..  ::.|..
  Fly   255 VAIVTEVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERS----------FPLQQLL--EIHRLN 307

  Fly   266 RNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKC 330
            ..:..::.|.:|...:.::..|.:|...|:|.:|.:|.||.:.|.:...|.||..|||....:.|
  Fly   308 HTRSRSFQCLLCEKSFFSKYDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFIC 372

  Fly   331 NYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVK 395
            .||...|..|....||...|.|:||:.|.||:::|.:...|:.|:.:|:...|..|..|.:.|..
  Fly   373 VYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFST 437

  Fly   396 AYKLRLHRETH 406
            |.||..|...|
  Fly   438 ASKLARHLVAH 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 27/81 (33%)
COG5048 <264..411 CDD:227381 44/143 (31%)
C2H2 Zn finger 274..294 CDD:275368 4/19 (21%)
zf-H2C2_2 287..311 CDD:290200 9/23 (39%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
zf-H2C2_2 315..338 CDD:290200 9/22 (41%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
zf-H2C2_2 345..367 CDD:290200 10/21 (48%)
C2H2 Zn finger 358..378 CDD:275368 6/19 (32%)
zf-H2C2_2 370..394 CDD:290200 6/23 (26%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871 27/81 (33%)
COG5048 <281..506 CDD:227381 49/180 (27%)
C2H2 Zn finger 288..308 CDD:275368 5/31 (16%)
C2H2 Zn finger 316..336 CDD:275368 4/19 (21%)
zf-H2C2_2 328..353 CDD:290200 9/24 (38%)
C2H2 Zn finger 344..364 CDD:275368 7/19 (37%)
C2H2 Zn finger 372..388 CDD:275370 5/15 (33%)
C2H2 Zn finger 400..420 CDD:275368 6/19 (32%)
C2H2 Zn finger 428..448 CDD:275368 7/19 (37%)
C2H2 Zn finger 456..476 CDD:275368
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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