DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and cg

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster


Alignment Length:354 Identity:90/354 - (25%)
Similarity:141/354 - (39%) Gaps:76/354 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 IMDMLDREASNANAAGEGDLL--------SIAEDLSVESVLKSW----EDYASQLDGGMKVEGEE 137
            ::|.....|:.|.|.|:..|.        ||.:..:.::||.:.    :.:.|.: |.:.:..||
  Fly   117 LVDPATAAAAAAAAGGDSGLAHHHTLTNGSIVDAKTGQTVLTAGSAAAKSHFSSI-GALHLTQEE 180

  Fly   138 DQQ-----------HQVITYVVEDGD----TDDTNMF-DVHDPTQPVPNEIEEAETYAEYEEYEL 186
            ..:           ||..|....||.    :..|..| .|...|..:.:.:.......:.....|
  Fly   181 CNEILIKRAIAAGHHQTHTITAADGSHHHASGGTPSFCSVGGATTLLGDILPGISVQVQKVIQGL 245

  Fly   187 LTNENS----PEIAQEKGSTGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAY 247
            ..||:|    |.:..|.|:      .|..|:.|:.|.:..|:.|                     
  Fly   246 EDNEDSQGEAPNLKLEPGT------LELSPKTELQESMHFSETD--------------------- 283

  Fly   248 HKNSPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQN 312
                   .|.||:   :|      |.||.||..:..:..||.|.:.|:|.:||.|..||:.|...
  Fly   284 -------ATIKKE---RP------YSCDECGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHK 332

  Fly   313 QQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMI 377
            ..|..|:..|:..|||:|..|..:|..:.....|.|:|::|||:||..|.|.|....:|..|...
  Fly   333 HCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKF 397

  Fly   378 HTGEKPHVCDLCGKGFVKAYKLRLHRETH 406
            |.||:|:||:.||:.|.:...|.:|...|
  Fly   398 HAGERPYVCEECGESFAQENHLIMHSRFH 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 0/1 (0%)
COG5048 <264..411 CDD:227381 51/143 (36%)
C2H2 Zn finger 274..294 CDD:275368 7/19 (37%)
C2H2 Zn finger 302..322 CDD:275368 6/19 (32%)
C2H2 Zn finger 330..350 CDD:275368 5/19 (26%)
C2H2 Zn finger 358..378 CDD:275368 6/19 (32%)
C2H2 Zn finger 386..406 CDD:275368 6/19 (32%)
cgNP_001097306.2 COG5048 287..>371 CDD:227381 30/92 (33%)
C2H2 Zn finger 294..314 CDD:275368 7/19 (37%)
zf-H2C2_2 306..331 CDD:463886 11/24 (46%)
C2H2 Zn finger 322..342 CDD:275368 6/19 (32%)
C2H2 Zn finger 350..370 CDD:275368 5/19 (26%)
C2H2 Zn finger 378..398 CDD:275368 6/19 (32%)
C2H2 Zn finger 406..426 CDD:275368 6/19 (32%)
C2H2 Zn finger 434..454 CDD:275368
C2H2 Zn finger 461..482 CDD:275368
C2H2 Zn finger 490..509 CDD:275368
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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