DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and cg

DIOPT Version :9

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster


Alignment Length:354 Identity:90/354 - (25%)
Similarity:141/354 - (39%) Gaps:76/354 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 IMDMLDREASNANAAGEGDLL--------SIAEDLSVESVLKSW----EDYASQLDGGMKVEGEE 137
            ::|.....|:.|.|.|:..|.        ||.:..:.::||.:.    :.:.|.: |.:.:..||
  Fly   117 LVDPATAAAAAAAAGGDSGLAHHHTLTNGSIVDAKTGQTVLTAGSAAAKSHFSSI-GALHLTQEE 180

  Fly   138 DQQ-----------HQVITYVVEDGD----TDDTNMF-DVHDPTQPVPNEIEEAETYAEYEEYEL 186
            ..:           ||..|....||.    :..|..| .|...|..:.:.:.......:.....|
  Fly   181 CNEILIKRAIAAGHHQTHTITAADGSHHHASGGTPSFCSVGGATTLLGDILPGISVQVQKVIQGL 245

  Fly   187 LTNENS----PEIAQEKGSTGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAY 247
            ..||:|    |.:..|.|:      .|..|:.|:.|.:..|:.|                     
  Fly   246 EDNEDSQGEAPNLKLEPGT------LELSPKTELQESMHFSETD--------------------- 283

  Fly   248 HKNSPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQN 312
                   .|.||:   :|      |.||.||..:..:..||.|.:.|:|.:||.|..||:.|...
  Fly   284 -------ATIKKE---RP------YSCDECGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHK 332

  Fly   313 QQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMI 377
            ..|..|:..|:..|||:|..|..:|..:.....|.|:|::|||:||..|.|.|....:|..|...
  Fly   333 HCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKF 397

  Fly   378 HTGEKPHVCDLCGKGFVKAYKLRLHRETH 406
            |.||:|:||:.||:.|.:...|.:|...|
  Fly   398 HAGERPYVCEECGESFAQENHLIMHSRFH 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 0/1 (0%)
COG5048 <264..411 CDD:227381 51/143 (36%)
C2H2 Zn finger 274..294 CDD:275368 7/19 (37%)
zf-H2C2_2 287..311 CDD:290200 11/23 (48%)
C2H2 Zn finger 302..322 CDD:275368 6/19 (32%)
zf-H2C2_2 315..338 CDD:290200 8/22 (36%)
C2H2 Zn finger 330..350 CDD:275368 5/19 (26%)
zf-H2C2_2 345..367 CDD:290200 11/21 (52%)
C2H2 Zn finger 358..378 CDD:275368 6/19 (32%)
zf-H2C2_2 370..394 CDD:290200 10/23 (43%)
C2H2 Zn finger 386..406 CDD:275368 6/19 (32%)
cgNP_001097306.2 COG5048 287..>371 CDD:227381 30/92 (33%)
C2H2 Zn finger 294..314 CDD:275368 7/19 (37%)
zf-H2C2_2 306..331 CDD:290200 11/24 (46%)
C2H2 Zn finger 322..342 CDD:275368 6/19 (32%)
C2H2 Zn finger 350..370 CDD:275368 5/19 (26%)
zf-H2C2_2 362..385 CDD:290200 10/22 (45%)
C2H2 Zn finger 378..398 CDD:275368 6/19 (32%)
zf-H2C2_2 390..415 CDD:290200 11/24 (46%)
C2H2 Zn finger 406..426 CDD:275368 6/19 (32%)
SIR2 <425..>465 CDD:294129 1/2 (50%)
C2H2 Zn finger 434..454 CDD:275368
C2H2 Zn finger 461..482 CDD:275368
C2H2 Zn finger 490..509 CDD:275368
lambda-1 491..>603 CDD:212564
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440479
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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