DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and ZNF233

DIOPT Version :9

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_024307256.1 Gene:ZNF233 / 353355 HGNCID:30946 Length:727 Species:Homo sapiens


Alignment Length:474 Identity:114/474 - (24%)
Similarity:171/474 - (36%) Gaps:141/474 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 CAGIPVSLDDNFPDKMCSKCVRCLRLCYKFRLTCQR-SHQHIMDMLDR--EASNANAAGEGDLLS 106
            |..|.|.      :|:| ||..|:|         || :|||....:.:  :|.:.|..|:    .
Human   255 CQQIDVK------NKLC-KCDHCVR---------QRIAHQHDDHGVHKREKAFSHNNCGK----D 299

  Fly   107 IAEDLSVESVLKSWEDYASQLDGGMKVEGE---------EDQQHQVITY---------------- 146
            ..::.|..|:::|.|..:.:...|:.|...         .|:.|..:.|                
Human   300 CVKESSQHSIIQSGEQTSDENGKGLSVGSNLELHQQLHLRDKPHVNVEYGKGIGYSSGLPRHQCF 364

  Fly   147 -----VVEDGDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQEKGSTGTDV 206
                 ...:||:.:.  |......|| ...:...|.....:.|...:|:||...:.|....|..:
Human   365 HIGEKCYRNGDSGEG--FSQGSHLQP-HQRVSTGENLYRCQVYARSSNQNSCLPSHELTHPGEKL 426

  Fly   207 AT-------------------EEPPEEEIAEDILDS-----------------DEDYD------- 228
            .|                   :...|.....|:.|.                 |:.|.       
Human   427 CTCGRCGKGFHHSLDFDIHCVDSAGERACKCDVYDKGFSQTSQLQAHQRGHSRDKTYKWEVSDRI 491

  Fly   229 -----------PTHAKPEKCD------------------RSGRKPVA-------YHKNSPKVETF 257
                       .|..||.||:                  .:|.||..       :.:||......
Human   492 FNRNSGLHQRVHTGEKPYKCEVCDKGFSKASNLQAHQRIHTGEKPYKCDVCDKNFSRNSHLQAHQ 556

  Fly   258 KKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTH 322
            :...|.||      |.||.||..:...:.|..|.:.|.|.||::||.||:||.|:..|..|...|
Human   557 RVHTGEKP------YKCDTCGKDFSQISHLQAHQRVHKGEKPYKCETCGKGFSQSSHLQDHQQVH 615

  Fly   323 TGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCD 387
            ||..||||:.|...|:..|....|.|:||.|:||.|:.|.:.|.::..|..|:.|||||||:.|.
Human   616 TGENPYKCDVCGKGFSWSSHLQAHQRVHTGEKPYKCEECRKGFIWNSYLHVHQRIHTGEKPYKCG 680

  Fly   388 LCGKGFVKAYKLRLHRETH 406
            :|||.|.:...|:.|:..|
Human   681 MCGKSFSQTSHLQAHQRVH 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 14/42 (33%)
COG5048 <264..411 CDD:227381 59/143 (41%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
zf-H2C2_2 287..311 CDD:290200 12/23 (52%)
C2H2 Zn finger 302..322 CDD:275368 9/19 (47%)
zf-H2C2_2 315..338 CDD:290200 10/22 (45%)
C2H2 Zn finger 330..350 CDD:275368 6/19 (32%)
zf-H2C2_2 345..367 CDD:290200 10/21 (48%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
zf-H2C2_2 370..394 CDD:290200 13/23 (57%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
ZNF233XP_024307256.1 KRAB 65..123 CDD:214630
C2H2 Zn finger 321..337 CDD:275368 2/15 (13%)
C2H2 Zn finger 345..365 CDD:275368 1/19 (5%)
C2H2 Zn finger 377..393 CDD:275368 3/18 (17%)
C2H2 Zn finger 401..421 CDD:275368 5/19 (26%)
C2H2 Zn finger 429..449 CDD:275368 0/19 (0%)
COG5048 <507..656 CDD:227381 51/154 (33%)
C2H2 Zn finger 511..531 CDD:275368 1/19 (5%)
C2H2 Zn finger 539..559 CDD:275368 2/19 (11%)
C2H2 Zn finger 567..587 CDD:275368 6/19 (32%)
C2H2 Zn finger 595..615 CDD:275368 9/19 (47%)
C2H2 Zn finger 623..643 CDD:275368 6/19 (32%)
C2H2 Zn finger 651..671 CDD:275368 5/19 (26%)
zf-C2H2 677..699 CDD:306579 7/21 (33%)
C2H2 Zn finger 679..699 CDD:275368 7/19 (37%)
zf-H2C2_2 691..714 CDD:316026 3/9 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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