DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Zfp68

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001100598.2 Gene:Zfp68 / 304337 RGDID:1310463 Length:592 Species:Rattus norvegicus


Alignment Length:460 Identity:122/460 - (26%)
Similarity:177/460 - (38%) Gaps:109/460 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SEGEELLH-DIFSETASTRLDQMLHICAGIPVSLDDNFPDKMCSKCVRCLRLCYKFRLTCQRSHQ 83
            :||:..|: |:..|..|..|  .|..|...| .|..|...::.|..|             :.|||
  Rat    28 NEGQRTLYRDVMLENYSNLL--FLGHCKTKP-ELIFNLEQRLGSWIV-------------EASHQ 76

  Fly    84 HIMDM----------------------LDREASNANAAGEGDLLSIAEDLSVESVLKS------- 119
            .|.|.                      |:.:.|. ..||.|:..:::.:......:||       
  Rat    77 SIPDFQKVNTLNETSPETKARHVCQVPLNSDTSE-ELAGIGNTCTVSTNCFSNQTVKSEDSLGMS 140

  Fly   120 ------WEDYASQLDGGMKVEGEEDQQHQVITYVVEDG-DTDDTN--MFDVHDPTQPVPNEIEEA 175
                  |:|        :.:..:.|:        ||.| :.||.|  :..|..|.:......:.:
  Rat   141 PRKFTLWKD--------VYLHNDVDE--------VEVGEEPDDLNGTVKSVRHPERVSLYRFQSS 189

  Fly   176 ETYAE-------YEEYELLTNENSPEIAQEKGST---GTDVA-----TEEPPEEEIAEDILDSDE 225
            :.|.:       :....:|......|.|:....|   |.::|     :.|....||..:..|.:|
  Rat   190 QGYFQSLIPGKSFNTKAVLLTHKFNEYAKSLVDTAFIGKEMAQIRVKSFECNVSEIKCNKSDLNE 254

  Fly   226 DYDPTH--AKPEKCDRSGRKPVAYHKNSPK-----VETFKKK-----------VGRKPRNKLSTY 272
            : ||.|  .|..||. ....|.......||     .:.|.:|           :.:|.|....||
  Rat   255 N-DPVHEGEKHYKCS-DFENPFIIESYLPKHKGQHEKLFVQKGYEFSQQSEVSLHQKIRRGKKTY 317

  Fly   273 ICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAF 337
            .|.:||..:..:.....|...|:|.||:||..|.:.|.|...|.:|...|||.|||.|..|..||
  Rat   318 ECKICGKCFYWKTSFNRHQSTHTGEKPYECTECSKAFCQKSHLTQHQRVHTGERPYICFECRKAF 382

  Fly   338 ADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGF-VKAYKLRL 401
            ..:|..|.|.||||.|:||.|..|.:.|.....|..|:.|||||||:.|..|||.| .|:| |.:
  Rat   383 YRKSELTDHQRIHTGEKPYECKECGKAFCQKPQLTLHQRIHTGEKPYECAECGKAFSTKSY-LTV 446

  Fly   402 HRETH 406
            |:.||
  Rat   447 HQRTH 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 18/67 (27%)
COG5048 <264..411 CDD:227381 62/144 (43%)
C2H2 Zn finger 274..294 CDD:275368 4/19 (21%)
C2H2 Zn finger 302..322 CDD:275368 6/19 (32%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
C2H2 Zn finger 386..406 CDD:275368 9/20 (45%)
Zfp68NP_001100598.2 KRAB 10..70 CDD:214630 13/44 (30%)
COG5048 <293..475 CDD:227381 63/160 (39%)
C2H2 Zn finger 295..311 CDD:275368 1/15 (7%)
C2H2 Zn finger 319..339 CDD:275368 4/19 (21%)
C2H2 Zn finger 347..367 CDD:275368 6/19 (32%)
C2H2 Zn finger 375..395 CDD:275368 8/19 (42%)
C2H2 Zn finger 403..423 CDD:275368 5/19 (26%)
C2H2 Zn finger 431..451 CDD:275368 9/20 (45%)
C2H2 Zn finger 459..479 CDD:275368
C2H2 Zn finger 487..507 CDD:275368
zf-H2C2_2 500..524 CDD:463886
COG5048 513..>586 CDD:227381
C2H2 Zn finger 515..535 CDD:275368
C2H2 Zn finger 543..563 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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