DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Zfp287

DIOPT Version :9

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001100478.1 Gene:Zfp287 / 303212 RGDID:1308617 Length:762 Species:Rattus norvegicus


Alignment Length:483 Identity:127/483 - (26%)
Similarity:195/483 - (40%) Gaps:139/483 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 NFPDKMCS---KCVRCLR-LCYKFRLTCQRSHQHIMDMLDREASNANAAGE-------------G 102
            |||....:   |.:..|| ||.|:......|.:.|:::|..|...:...||             .
  Rat    54 NFPYPDVAGPRKALSQLRELCLKWLRPEVHSKEQILELLVLEQFLSILPGEVRTWVNSQYPENSE 118

  Fly   103 DLLSIAEDLSVESVLKSWEDYASQLDGGMKVEGEEDQQHQVITYVVEDGDTDDTNMF-DVH-DPT 165
            :::::.|||:  .:|   |:.|.|.....:...|||.:|.:.|..:.|..|.::..| ||. |.|
  Rat   119 EVVALVEDLA--QIL---EEEAPQNSALPQEIPEEDPKHALETGWLNDLVTKESVTFNDVAVDIT 178

  Fly   166 Q-------PVPNEIEEAETYAEY-------------------EEYELLTNE----NSPE------ 194
            |       ||..|:.:..|...|                   ||..::..|    .|||      
  Rat   179 QEDWELMRPVEKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEIVEGPSPEWETKAQ 243

  Fly   195 -------------------------------------------IAQEKGSTGTDVATEEPPEEEI 216
                                                       |.::..|..::::.|:|.||.:
  Rat   244 ACSPLKDFPKLKQDGTQTIKLEESCDCEDGLERQPAYAFRKIHIDEDDFSLKSELSQEDPTEECL 308

  Fly   217 AEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKNSPKVETF-----------KKKVGRKP----- 265
            ::..|..|.....|:...:...:|..|.:.|:::.|   ||           |...|.||     
  Rat   309 SKYDLYRDNFEKHTNLIIQFDTQSDSKTLLYNESKP---TFTNVSSGGVVHGKILPGDKPYSCNV 370

  Fly   266 --------------RN---KLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQ 313
                          ||   |..:|.|:.||..:...:.|..|.:.|:|.||:||..||:.|.|..
  Rat   371 CGKKFRKYPSLLAHRNNHAKDKSYECEECGKEFKHLSSLIAHQRMHTGEKPYECHQCGKAFSQRA 435

  Fly   314 QLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIH 378
            .|..|...|||.:|||||.|...|:.|:..|.|.|.||.|:||.|..||:||::|.:|..|:.:|
  Rat   436 HLTIHQRIHTGEKPYKCNDCGKDFSQRAHLTIHQRTHTGEKPYKCLECSKTFSHSSSLINHQRVH 500

  Fly   379 TGEKPHVCDLCGKGFVKAYKLRLHRETH 406
            |||||::|:.|||.|.::..|..|::.|
  Rat   501 TGEKPYICNECGKTFSQSTHLLQHQKIH 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 11/35 (31%)
COG5048 <264..411 CDD:227381 64/165 (39%)
C2H2 Zn finger 274..294 CDD:275368 5/19 (26%)
zf-H2C2_2 287..311 CDD:290200 11/23 (48%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
zf-H2C2_2 315..338 CDD:290200 11/22 (50%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
zf-H2C2_2 345..367 CDD:290200 12/21 (57%)
C2H2 Zn finger 358..378 CDD:275368 8/19 (42%)
zf-H2C2_2 370..394 CDD:290200 12/23 (52%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
Zfp287NP_001100478.1 SCAN 46..133 CDD:280241 19/83 (23%)
KRAB 168..225 CDD:214630 13/56 (23%)
KRAB 168..207 CDD:279668 11/38 (29%)
C2H2 Zn finger 368..388 CDD:275368 2/19 (11%)
zf-C2H2 394..416 CDD:278523 6/21 (29%)
C2H2 Zn finger 396..416 CDD:275368 5/19 (26%)
zf-H2C2_2 408..433 CDD:290200 11/24 (46%)
COG5048 420..752 CDD:227381 51/109 (47%)
C2H2 Zn finger 424..444 CDD:275368 7/19 (37%)
zf-H2C2_2 436..461 CDD:290200 12/24 (50%)
C2H2 Zn finger 452..472 CDD:275368 8/19 (42%)
zf-H2C2_2 464..489 CDD:290200 13/24 (54%)
C2H2 Zn finger 480..500 CDD:275368 8/19 (42%)
zf-H2C2_2 492..517 CDD:290200 13/24 (54%)
C2H2 Zn finger 508..528 CDD:275368 7/19 (37%)
zf-H2C2_2 520..545 CDD:290200 3/9 (33%)
C2H2 Zn finger 536..556 CDD:275368
zf-H2C2_2 548..573 CDD:290200
C2H2 Zn finger 564..584 CDD:275368
zf-C2H2 590..612 CDD:278523
C2H2 Zn finger 592..612 CDD:275368
zf-H2C2_2 604..629 CDD:290200
C2H2 Zn finger 620..640 CDD:275368
zf-H2C2_2 632..657 CDD:290200
C2H2 Zn finger 648..668 CDD:275368
zf-H2C2_2 660..685 CDD:290200
C2H2 Zn finger 676..696 CDD:275368
zf-H2C2_2 688..713 CDD:290200
C2H2 Zn finger 704..724 CDD:275368
zf-H2C2_2 717..741 CDD:290200
C2H2 Zn finger 732..752 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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