DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Zkscan4

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001425118.1 Gene:Zkscan4 / 291164 RGDID:1309004 Length:480 Species:Rattus norvegicus


Alignment Length:390 Identity:111/390 - (28%)
Similarity:167/390 - (42%) Gaps:87/390 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 NAAGEGDLLSIAEDL----------SVESVLK--SWEDYASQLDGGMKV---EGEEDQQHQVITY 146
            :|||....||...:|          |.|.:|:  ..|.:.:.|.|.::.   |...|...:|:. 
  Rat    61 DAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGEEVVA- 124

  Fly   147 VVE--DGDTDDTNMFDVHDPTQPVP------------------------NEIEEAETYAEYEEYE 185
            ::|  |...|:|       |.| ||                        :..:..::..::|..|
  Rat   125 LLEYLDRQLDET-------PPQ-VPTGEWSRELLCCKVALVTSSQDSQSSHSQAMKSLFKHESQE 181

  Fly   186 LLTNENSPEIAQEKG------STGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKP 244
            .|  |.||  .|.:|      :.|..:| ||..|::..:.:....||........|..::.|   
  Rat   182 SL--ECSP--LQARGLEMKPETRGLPLA-EEYKEQKPEQTVWFLGEDTVQISTSTEASEQEG--- 238

  Fly   245 VAYHKNSPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGF 309
                    |::|.:|......|     :.|..||..:...:.||:|.:.|:|.||:|||.||:.|
  Rat   239 --------KLQTTQKNATGNRR-----FYCHECGKSFAQSSGLTKHKRIHTGEKPYECEDCGKTF 290

  Fly   310 VQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFH 374
            :.:..||.|...|||.:||:|..|...|:..|...||.|.||.|:||.||.|.:|||.|.:|..|
  Rat   291 IGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEH 355

  Fly   375 KMIHTGEKPHVCDLCGKGFVKAYKLRLHRETHNRRI--------TWRNDAEESTKAEDVKGETPE 431
            ..|||||||..|:||||.|.::..|..|:..|..:.        ||...:..::..:.|  |.||
  Rat   356 HKIHTGEKPFQCNLCGKAFRRSSHLLRHQRIHGDKAAPKLLHGETWEGQSRVASLGDIV--EAPE 418

  Fly   432  431
              Rat   419  418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381 62/154 (40%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
C2H2 Zn finger 302..322 CDD:275368 8/19 (42%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
C2H2 Zn finger 358..378 CDD:275368 9/19 (47%)
C2H2 Zn finger 386..406 CDD:275368 8/19 (42%)
Zkscan4NP_001425118.1 None
Blue background indicates that the domain is not in the aligned region.

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