DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and Zscan12

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_057893.2 Gene:Zscan12 / 22758 MGIID:1099444 Length:501 Species:Mus musculus


Alignment Length:384 Identity:107/384 - (27%)
Similarity:164/384 - (42%) Gaps:57/384 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 RCLRLCYKFRLTCQRSHQHIMDMLDREASNANAAGEGDLLSIAEDL---SVESVLKSWEDYASQL 127
            |...||.::......|.:.|:::|..|.......||  |.:..::.   |||.|:...||...:|
Mouse    66 RLRELCRQWLRPDLNSKEQILELLVLEQFLTILPGE--LQAWVQEQNPESVEEVVTVLEDLEREL 128

  Fly   128 DG-GMK--VEGEEDQQHQVITYVVEDGDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTN 189
            |. |.:  |:.||....|.:..:..:.....:..|....|      ..|.|...|:.|:...:..
Mouse   129 DELGYRASVQTEEQVTFQEVKPLATEQKPSVSLQFVKAKP------GCELAGREAQEEQVSGVET 187

  Fly   190 ENSPEIAQEKGSTGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSG-----RKPVAYHK 249
            .|.|.....|.........|:.|...:|:|.|:.:|.::|..      :.||     .:|:....
Mouse   188 GNEPRNVTLKQGLWEGTEAEQNPASRLAKDALECEEAHNPGE------ESSGISHEDSQPLRNEN 246

  Fly   250 --NSPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQN 312
              |||....:.|.....|..|:  :.||.||..:...:||.||.:.|:|.:|::||:||:.|...
Mouse   247 GVNSPANSEYAKHQSICPGRKV--HGCDECGKSFTQHSRLIEHKRVHTGDRPYKCEVCGKTFRWR 309

  Fly   313 QQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKE------------------------ 353
            ..|:||...|||.:|||||.|..||...|...:|.|:|:.|                        
Mouse   310 TVLIRHKVVHTGEKPYKCNECGRAFGQWSALNQHQRLHSGEKHYHCNECGKAFCQKAGLFHHLKS 374

  Fly   354 ----RPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLRLHRETHNR 408
                |||.|..|:::|.....|..|:.:|||.||:.|:.|||.||....|..|:|||::
Mouse   375 HRRNRPYQCLQCNKSFNRRSTLSQHQGVHTGAKPYECNDCGKAFVYNSSLATHQETHHK 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871 5/20 (25%)
COG5048 <264..411 CDD:227381 61/173 (35%)
C2H2 Zn finger 274..294 CDD:275368 8/19 (42%)
C2H2 Zn finger 302..322 CDD:275368 8/19 (42%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
C2H2 Zn finger 386..406 CDD:275368 9/19 (47%)
Zscan12NP_057893.2 SCAN 42..148 CDD:128708 23/83 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 175..194 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 223..255 8/37 (22%)
COG5048 <231..437 CDD:227381 68/205 (33%)
C2H2 Zn finger 271..291 CDD:275368 8/19 (42%)
C2H2 Zn finger 299..319 CDD:275368 8/19 (42%)
C2H2 Zn finger 327..347 CDD:275368 8/19 (42%)
C2H2 Zn finger 355..375 CDD:275368 0/19 (0%)
C2H2 Zn finger 383..403 CDD:275368 5/19 (26%)
C2H2 Zn finger 411..449 CDD:275368 11/23 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 429..450 3/5 (60%)
zf-H2C2_2 446..466 CDD:463886
C2H2 Zn finger 457..477 CDD:275368
C2H2 Zn finger 485..501 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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