DRSC/TRiP Functional Genomics Resources

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Protein Alignment trem and ZNF600

DIOPT Version :10

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001308795.1 Gene:ZNF600 / 162966 HGNCID:30951 Length:791 Species:Homo sapiens


Alignment Length:220 Identity:74/220 - (33%)
Similarity:101/220 - (45%) Gaps:22/220 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 THAKPEKCDRSGRKPVAYHKNSPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFH 294
            |..||.||:..|       |:..:|.:.  ...|:....:.::.|:.||.|:...:.|..|...|
Human   282 TGEKPYKCNECG-------KSFSQVSSL--TCHRRLHTAVKSHKCNECGKIFGQNSALVIHKAIH 337

  Fly   295 SGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCD 359
            :|.||::|..|.:.|.|...|.||...|||.:||||..|...|:.:||...|.||||.|:||.|.
Human   338 TGEKPYKCNECDKAFNQQSNLARHRRIHTGEKPYKCEECDKVFSRKSTLESHKRIHTGEKPYKCK 402

  Fly   360 VCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLRLHRETH-----------NRRITWR 413
            ||...||::..|..||.||||||.:.|:.|||.|.....|..|...|           ::...|.
Human   403 VCDTAFTWNSQLARHKRIHTGEKTYKCNECGKTFSHKSSLVCHHRLHGGEKSYKCKVCDKAFAWN 467

  Fly   414 NDAEESTKAEDVKGETPEFLNELPK 438
            :.....|:..  .|..|...||..|
Human   468 SHLVRHTRIH--SGGKPYKCNECGK 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381 58/157 (37%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
C2H2 Zn finger 358..378 CDD:275368 8/19 (42%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
ZNF600NP_001308795.1 KRAB 24..60 CDD:460171
COG5048 <154..503 CDD:227381 74/220 (34%)
C2H2 Zn finger 233..253 CDD:275368
C2H2 Zn finger 261..281 CDD:275368
C2H2 Zn finger 289..309 CDD:275368 5/28 (18%)
C2H2 Zn finger 317..337 CDD:275368 6/19 (32%)
COG5048 341..748 CDD:227381 57/152 (38%)
C2H2 Zn finger 345..365 CDD:275368 7/19 (37%)
C2H2 Zn finger 373..393 CDD:275368 7/19 (37%)
C2H2 Zn finger 401..421 CDD:275368 8/19 (42%)
C2H2 Zn finger 429..449 CDD:275368 7/19 (37%)
C2H2 Zn finger 457..477 CDD:275368 2/19 (11%)
C2H2 Zn finger 485..505 CDD:275368 3/6 (50%)
C2H2 Zn finger 513..533 CDD:275368
C2H2 Zn finger 541..561 CDD:275368
C2H2 Zn finger 569..589 CDD:275368
C2H2 Zn finger 597..617 CDD:275368
C2H2 Zn finger 625..645 CDD:275368
C2H2 Zn finger 653..673 CDD:275368
C2H2 Zn finger 681..701 CDD:275368
C2H2 Zn finger 709..729 CDD:275368
C2H2 Zn finger 737..757 CDD:275368
zf-H2C2_2 749..774 CDD:463886
C2H2 Zn finger 765..785 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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