DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trem and si:dkey-34m19.3

DIOPT Version :9

Sequence 1:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_002662346.1 Gene:si:dkey-34m19.3 / 100005466 ZFINID:ZDB-GENE-030131-2206 Length:619 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381
C2H2 Zn finger 274..294 CDD:275368
zf-H2C2_2 287..311 CDD:290200
C2H2 Zn finger 302..322 CDD:275368
zf-H2C2_2 315..338 CDD:290200
C2H2 Zn finger 330..350 CDD:275368
zf-H2C2_2 345..367 CDD:290200
C2H2 Zn finger 358..378 CDD:275368
zf-H2C2_2 370..394 CDD:290200
C2H2 Zn finger 386..406 CDD:275368
si:dkey-34m19.3XP_002662346.1 THAP 16..96 CDD:283206
C2H2 Zn finger 389..409 CDD:275368
zf-H2C2_2 401..426 CDD:290200
C2H2 Zn finger 417..437 CDD:275368
zf-H2C2_2 431..454 CDD:290200
C2H2 Zn finger 445..465 CDD:275368
zf-H2C2_2 457..482 CDD:290200
C2H2 Zn finger 473..493 CDD:275368
zf-H2C2_2 485..510 CDD:290200
C2H2 Zn finger 501..521 CDD:275368
zf-H2C2_2 513..538 CDD:290200
C2H2 Zn finger 529..549 CDD:275368
zf-H2C2_2 542..565 CDD:290200
C2H2 Zn finger 557..577 CDD:275368
zf-H2C2_2 569..594 CDD:290200
C2H2 Zn finger 585..605 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.