DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4854 and CG18764

DIOPT Version :9

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_652712.2 Gene:CG18764 / 59239 FlyBaseID:FBgn0042205 Length:409 Species:Drosophila melanogaster


Alignment Length:408 Identity:100/408 - (24%)
Similarity:152/408 - (37%) Gaps:118/408 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LKCRIC--LV---QPKDESLMPTEPDFPDKIKRCTGVELSESPDWPNRICTSCALLLRAALKLRS 69
            |:||.|  ::   .||:...:..|....| |...||..|...|:.|:.||..|.|.|..|:..|.
  Fly     3 LQCRTCGSIIYNKMPKNLFHIENEKMLQD-INLVTGTTLHNDPELPSSICACCTLDLNQAILFRE 66

  Fly    70 LCQQTEKDLKEQKLQEINIEIVHDEQETKKKTESRDL-----------------------SKNEA 111
            .|..|:|            ::||..:..:.|..:.|:                       |..|.
  Fly    67 RCILTQK------------QLVHRRRSPEAKEPAEDVEEMASPPDCLNDPFGEVDEYIVESPEEV 119

  Fly   112 TGSDSELEYE-----YLDSY----------DVTLESSEDV-------------ACSADE------ 142
            ...||:..::     |:||.          :|..|.|:||             .|:.|.      
  Fly   120 LDHDSDAHHDLDEDNYIDSVEDVDALQDMAEVAEEDSQDVESLISSVQKELESICNDDSNSDNND 184

  Fly   143 -----------------LVSIEPAISAPE-ESVYSLSPKPVTFEDEDSGQAASF----------- 178
                             .||..|....|| :|....|.||.|.:.:...|..::           
  Fly   185 YMEPQNGSYFNETINEYEVSSNPNTPLPESKSAAGRSTKPATTKPKRKKQYVTWKNMTEEQIIER 249

  Fly   179 ---------TCNICNNVYSERVKLTNHMKVHSAKKPHECEICHKRFRQTPQLARHMN-THTGNRP 233
                     .|..|...::::.....||..|:..|...|:.|.|||.....:..|.. .|.|.:|
  Fly   250 KRLQRKRECVCEQCGRQFTDQSNFKLHMLRHTGNKNFACQQCGKRFYTDHLMTLHQRIIHQGEKP 314

  Fly   234 YKCDYCDSRFADPSTRIKHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKS 298
            |.|.:|...|.:.:||:.|:|.|||.:||.|..|.:.|..::..:.|...|||.|.|:|..|::|
  Fly   315 YDCRFCTKSFHNSNTRLIHERTHTNAKPYSCHHCDKCFKSASGRKRHELIHTGVRAFACTICKQS 379

  Fly   299 FSQLHHKNSHEKSHKRTK 316
            |    .:|:|.|:|.|:|
  Fly   380 F----QRNTHLKAHLRSK 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:285071 15/49 (31%)
C2H2 Zn finger 180..200 CDD:275368 4/19 (21%)
zf-H2C2_2 193..217 CDD:290200 9/23 (39%)
COG5048 201..>258 CDD:227381 19/57 (33%)
C2H2 Zn finger 208..228 CDD:275368 6/20 (30%)
zf-H2C2_2 221..244 CDD:290200 7/23 (30%)
C2H2 Zn finger 236..256 CDD:275368 7/19 (37%)
zf-H2C2_2 251..273 CDD:290200 10/21 (48%)
C2H2 Zn finger 264..284 CDD:275368 4/19 (21%)
zf-H2C2_2 277..301 CDD:290200 10/23 (43%)
C2H2 Zn finger 292..312 CDD:275368 7/19 (37%)
CG18764NP_652712.2 zf-AD 4..75 CDD:214871 23/83 (28%)
C2H2 Zn finger 260..280 CDD:275368 4/19 (21%)
zf-H2C2_2 272..297 CDD:290200 9/24 (38%)
C2H2 Zn finger 288..309 CDD:275368 6/20 (30%)
C2H2 Zn finger 317..337 CDD:275368 7/19 (37%)
C2H2 Zn finger 345..365 CDD:275368 4/19 (21%)
C2H2 Zn finger 373..391 CDD:275368 8/21 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

Return to query results.
Submit another query.