DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4854 and Zkscan4

DIOPT Version :10

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001034204.1 Gene:Zkscan4 / 544922 MGIID:3649412 Length:480 Species:Mus musculus


Alignment Length:309 Identity:91/309 - (29%)
Similarity:137/309 - (44%) Gaps:54/309 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ICLVQPKDESLMPTEPDFPDKIKRCTGVELSESPDWPNR-ICTSCALLLRAALKLRSLCQ----- 72
            :.|::..|..|..|.|..      .||       :|... :|...|::..:.....|.||     
Mouse   123 VALLEYLDRQLDDTPPQV------STG-------EWSRELLCCKVAVVTPSQDSQSSHCQAMKSL 174

  Fly    73 ---QTEKDLKEQKLQEINIEIVHDEQETKKKTESRDLSKNEATGSDSELEYEYLDSYDVTLESSE 134
               ::::.|:...||...:|:         |.|:|||.:.|          ||.|      :..|
Mouse   175 FKHESQESLECSPLQARGLEM---------KPETRDLPRAE----------EYRD------QKPE 214

  Fly   135 DVAC-SADELVSIEPAISAPEESVYSLSPKPVTFEDEDSGQAASFTCNICNNVYSERVKLTNHMK 198
            ...| ..::.|.|.....|.|:     ..|..|.:...:|....|.|. |...:::...||.|.:
Mouse   215 QTVCFLGEDTVPIPTGAEASEQ-----EGKLQTAQKSATGTRRHFCCE-CGKSFAQSSGLTKHKR 273

  Fly   199 VHSAKKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRIKHQRIHTNERPYK 263
            :|:.:||:|||.|.|.|..:..|..|...|||.:||:|:.|...|:..|..|||||.||.|:||:
Mouse   274 IHTGEKPYECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYE 338

  Fly   264 CEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFSQLHHKNSHEKSH 312
            |:.|.::|..|..|..|.|.||||:||.|..|.|:|.:..|...|::.|
Mouse   339 CDDCGKTFTQSCSLLEHHKIHTGEKPFQCNLCGKAFRRSSHLLRHQRIH 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:214871 9/43 (21%)
C2H2 Zn finger 180..200 CDD:275368 5/19 (26%)
COG5048 201..>258 CDD:227381 25/56 (45%)
C2H2 Zn finger 208..228 CDD:275368 7/19 (37%)
zf-H2C2_2 221..244 CDD:463886 9/22 (41%)
C2H2 Zn finger 236..256 CDD:275368 9/19 (47%)
zf-H2C2_2 251..271 CDD:463886 11/19 (58%)
C2H2 Zn finger 264..284 CDD:275368 7/19 (37%)
C2H2 Zn finger 292..312 CDD:275368 6/19 (32%)
Zkscan4NP_001034204.1 SCAN 47..155 CDD:128708 9/44 (20%)
zf-C2H2 253..275 CDD:395048 6/22 (27%)
C2H2 Zn finger 255..275 CDD:275368 5/20 (25%)
zf-H2C2_2 268..290 CDD:463886 11/21 (52%)
zf-C2H2 281..303 CDD:395048 8/21 (38%)
C2H2 Zn finger 283..303 CDD:275368 7/19 (37%)
COG5048 <307..471 CDD:227381 36/81 (44%)
C2H2 Zn finger 311..331 CDD:275368 9/19 (47%)
C2H2 Zn finger 339..359 CDD:275368 7/19 (37%)
C2H2 Zn finger 367..387 CDD:275368 6/19 (32%)
C2H2 Zn finger 422..442 CDD:275368
C2H2 Zn finger 450..470 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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