DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4854 and Zscan4f

DIOPT Version :10

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:XP_578644.4 Gene:Zscan4f / 503124 RGDID:1563625 Length:510 Species:Rattus norvegicus


Alignment Length:370 Identity:84/370 - (22%)
Similarity:135/370 - (36%) Gaps:107/370 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DESLMPTEPDFPDKIKRCTGVELSESPDWPNRICTSCALLLRAALKLRSLCQQTEKDLKEQKLQ- 84
            :.:.||..  |.:.|...||.|.||:.                    .:....||.::.:...: 
  Rat   169 ESTQMPAH--FTEDILLATGQENSENK--------------------HTSGNSTEVNIGDSSTRH 211

  Fly    85 EINIEIVHDEQETKKKTESRDLSKNEATGS-----DSELEYEYLDSY---DVTLES--------- 132
            |:|..::..::..:.:.|.|..|...|.|:     :|....|:|..:   |:.:|:         
  Rat   212 EMNSLLIIQKEPPRPEQEERLDSFQFAQGARASQGNSSHHVEFLSPHTCRDIPMEAQPVIFYRTN 276

  Fly   133 -SED--VAC----------SADEL-------VSIEPAISAPEESV----YSLSP-----KP---- 164
             |||  ..|          |.|.:       :.|...:..||..:    |.:|.     .|    
  Rat   277 ISEDREECCTTSKNATQENSGDNIPMRKMDSIFINQRMYHPEPKMGDVSYGVSQDFTRRSPGTST 341

  Fly   165 -------VTFEDEDSGQAASFTCNICNNVYSERVKLTN-----------------HMK-VHSAKK 204
                   :||.::|.....        .|:|...|||:                 |.| :|...|
  Rat   342 SQQESLGLTFSEDDPRDIP--------GVHSRPEKLTSEAVLLYQYQEANSTSKIHQKRLHVGSK 398

  Fly   205 PHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRIKHQRIHTNERPYKCEFCSR 269
            .:.||.|.:.|:....|:.|..||...:.:.|..|...|...|....|:.||..|:|:||..|.:
  Rat   399 QYNCEECPRTFKYASHLSLHQRTHQNKKAFVCPTCQKTFKRASDLRCHEVIHNPEKPFKCSTCEK 463

  Fly   270 SFGYSNVLRVHLKTHTGERPFSCQYCQKSFSQLHHKNSHEKS-HK 313
            ||.:...|:.|.:.||||:|:.|..|...|.|....|.|.:: ||
  Rat   464 SFSHKTNLKAHERIHTGEKPYVCSLCSHRFCQSSTYNRHLRNVHK 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:214871 9/35 (26%)
C2H2 Zn finger 180..200 CDD:275368 7/37 (19%)
COG5048 201..>258 CDD:227381 16/56 (29%)
C2H2 Zn finger 208..228 CDD:275368 6/19 (32%)
zf-H2C2_2 221..244 CDD:463886 6/22 (27%)
C2H2 Zn finger 236..256 CDD:275368 5/19 (26%)
zf-H2C2_2 251..271 CDD:463886 8/19 (42%)
C2H2 Zn finger 264..284 CDD:275368 6/19 (32%)
C2H2 Zn finger 292..312 CDD:275368 6/20 (30%)
Zscan4fXP_578644.4 None

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