DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4854 and Meics

DIOPT Version :9

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster


Alignment Length:454 Identity:101/454 - (22%)
Similarity:157/454 - (34%) Gaps:156/454 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHTNVD-SRDLKCRICLVQPKDESLMPTEPDFPDKIKRCTGVELSESPDW--------------- 49
            |..:|| |....||.|   .:..|::   .|...|       |:|:.|.|               
  Fly     9 MERSVDASMGKNCRAC---AEHSSIL---VDLFSK-------EISDPPIWEMLNSILPEICRVKR 60

  Fly    50 ---PNRICTSCALLLRAALKLRSLCQQT------------------------------------- 74
               |.:||.:|.:..:.|...|..|:|:                                     
  Fly    61 DEMPQKICPTCLVAAQNAFHFRHKCEQSFQFFSQLLQLDKSNSNLSRSHCRRGTMNPLIPFEIVG 125

  Fly    75 -------------------EKDLKE------------QKLQEINIEIVHDEQETKKKTESRDL-- 106
                               :.|:.|            :.|||: .||..::.:|:.:...::.  
  Fly   126 CEDPLDTNVTKLDANRPDVKTDIDEPTDGKATNGQESEPLQEV-FEITMNDIKTEDEVSIQETFE 189

  Fly   107 ----SKNEATGSDSELEYEYLDSYDVTLESSED--------------VACSADELVSIEPAISAP 153
                .:|:...:|||.|    ||...|:.|:||              |..:...|:..|..:|..
  Fly   190 DAFDEENDNNNTDSERE----DSDQWTVGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYS 250

  Fly   154 EESVYSLSPKPVTFEDEDSGQAASFTCNICNNVYSERVKLTNHMKVHSAKKPHECEICHKRFRQT 218
            .:...:   :.|....|.........|:.|...:....:||.|.:.|:.::|.:|.:|.|.:...
  Fly   251 TQKALA---RHVAKHKEQGDTQKPHLCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHG 312

  Fly   219 PQLARHMNT----------------------------HTGNRPYKCDYCDSRFADPSTRIKHQRI 255
            |.|..||:|                            |||.|||||..|...||..|....|.|:
  Fly   313 PTLKSHMHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERPYKCPDCPQTFAKNSGLKLHSRL 377

  Fly   256 HTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFSQLHHKNSHEKSHKRTKEVK 319
            |..|||:|||.|.:.|..:..|..||:.|.|:|.|.|..|.|||.:..:...|:::|...|..|
  Fly   378 HKEERPFKCELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPFK 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:285071 13/62 (21%)
C2H2 Zn finger 180..200 CDD:275368 5/19 (26%)
zf-H2C2_2 193..217 CDD:290200 8/23 (35%)
COG5048 201..>258 CDD:227381 24/84 (29%)
C2H2 Zn finger 208..228 CDD:275368 8/47 (17%)
zf-H2C2_2 221..244 CDD:290200 13/50 (26%)
C2H2 Zn finger 236..256 CDD:275368 7/19 (37%)
zf-H2C2_2 251..273 CDD:290200 11/21 (52%)
C2H2 Zn finger 264..284 CDD:275368 7/19 (37%)
zf-H2C2_2 277..301 CDD:290200 12/23 (52%)
C2H2 Zn finger 292..312 CDD:275368 6/19 (32%)
MeicsNP_524062.1 zf-AD 21..95 CDD:285071 18/86 (21%)
C2H2 Zn finger 242..262 CDD:275368 3/22 (14%)
C2H2 Zn finger 274..294 CDD:275368 5/19 (26%)
zf-H2C2_2 287..311 CDD:290200 8/23 (35%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
C2H2 Zn finger 330..350 CDD:275368 0/19 (0%)
zf-H2C2_2 342..366 CDD:290200 9/23 (39%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
COG5048 <395..583 CDD:227381 16/47 (34%)
zf-C2H2 412..434 CDD:278523 7/21 (33%)
C2H2 Zn finger 414..434 CDD:275368 6/19 (32%)
zf-H2C2_2 426..451 CDD:290200 4/16 (25%)
C2H2 Zn finger 442..462 CDD:275368 101/454 (22%)
zf-H2C2_2 454..478 CDD:290200
C2H2 Zn finger 470..486 CDD:275368
C2H2 Zn finger 500..520 CDD:275368
C2H2 Zn finger 532..552 CDD:275370
C2H2 Zn finger 559..579 CDD:275370
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440472
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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