DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4854 and pita

DIOPT Version :9

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:468 Identity:89/468 - (19%)
Similarity:157/468 - (33%) Gaps:166/468 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 CRICLVQPKDESLMPTEP------DFPDKIKRCTGVELSESPDWPNRICTSCALLLRAALKLRSL 70
            ||.||.:.|..|:....|      :.|.:|...|.:|:......|..||..|.||.....:.:.:
  Fly    18 CRFCLTEQKLASIFEENPRVKTTANLPLQIMAITAIEVYAGDGMPGHICLECRLLFEHCYRFKQM 82

  Fly    71 CQQTEKDLKE-----------------------QKLQEINIEIVHDEQETKKKTESRDLSKNEAT 112
            |::.|..|::                       :||..:..:.....:..||...:...|.::..
  Fly    83 CKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLNTMAKSSSQVI 147

  Fly   113 GSDSELEYEYLDS--------------------YDVTLE-----SSEDVACSADELVS------- 145
            ..|.::    |:|                    |::.::     |.:||....:::.|       
  Fly   148 IEDVQV----LESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLEDMASELEKEFP 208

  Fly   146 -----------------------------IEPAISAPEES---------VYSLSPKPVTFEDEDS 172
                                         :||.::.|:..         |..:....:..:|:|.
  Fly   209 DIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVAIVTEVLDSDLPLDDQDD 273

  Fly   173 -----------------------------------GQAASFTCNICNNVYSERVKLTNHMKVHSA 202
                                               .::.||.|.:|...:..:..|..|..||:.
  Fly   274 PTKNAEKVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSFFSKYDLAKHNFVHTG 338

  Fly   203 KKPHECEICHKRFRQTPQLARHMNTHTG----------------------------NRPYKCDYC 239
            ::|.:|.||.|.|.:...|.||..|||.                            .||::|..|
  Fly   339 ERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQCGVC 403

  Fly   240 DSRFADPSTRIKHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFSQLHH 304
            ...||......:|:.:|:...|:.|:.|.|||..::.|..||..|.|:|.:.|:||.||:...||
  Fly   404 TKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAHAGKRAYPCKYCHKSYMLSHH 468

  Fly   305 KNSHEKSHKRTKE 317
            .:.|.::|.:|.:
  Fly   469 LSRHLRTHTQTSD 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:285071 14/50 (28%)
C2H2 Zn finger 180..200 CDD:275368 4/19 (21%)
zf-H2C2_2 193..217 CDD:290200 10/23 (43%)
COG5048 201..>258 CDD:227381 20/84 (24%)
C2H2 Zn finger 208..228 CDD:275368 8/19 (42%)
zf-H2C2_2 221..244 CDD:290200 10/50 (20%)
C2H2 Zn finger 236..256 CDD:275368 5/19 (26%)
zf-H2C2_2 251..273 CDD:290200 8/21 (38%)
C2H2 Zn finger 264..284 CDD:275368 8/19 (42%)
zf-H2C2_2 277..301 CDD:290200 11/23 (48%)
C2H2 Zn finger 292..312 CDD:275368 8/19 (42%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871 20/73 (27%)
COG5048 <281..506 CDD:227381 50/201 (25%)
C2H2 Zn finger 288..308 CDD:275368 0/19 (0%)
C2H2 Zn finger 316..336 CDD:275368 4/19 (21%)
zf-H2C2_2 328..353 CDD:290200 10/24 (42%)
C2H2 Zn finger 344..364 CDD:275368 8/19 (42%)
C2H2 Zn finger 372..388 CDD:275370 0/15 (0%)
C2H2 Zn finger 400..420 CDD:275368 5/19 (26%)
C2H2 Zn finger 428..448 CDD:275368 8/19 (42%)
C2H2 Zn finger 456..476 CDD:275368 8/19 (42%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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