DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4854 and Zkscan2

DIOPT Version :10

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001419304.1 Gene:Zkscan2 / 368120 RGDID:1359568 Length:960 Species:Rattus norvegicus


Alignment Length:341 Identity:81/341 - (23%)
Similarity:126/341 - (36%) Gaps:90/341 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CTSCALLLRAALKLRSLCQQTEKDLKEQKLQEINIEIVHDEQETKKKTESRDLSKNEATGSDSEL 118
            |.:.||....:.::.||.:|          :..:||:...|..|.:..||...:..|.:||:...
  Rat   578 CRTAALPTNTSEEIPSLSRQ----------ERGHIEVEPQEPTTWEPEESSQEAVLEDSGSERMS 632

  Fly   119 EYEYLDSYDVTLESSEDVACSADE-----LVSIEP--AISAPEESVYSLSPKPVTF--------- 167
            |.|..:  :...|.|..:..|..:     ::...|  .|....||..:|..||..|         
  Rat   633 EEEITE--EPEFEGSAGLPQSPTDFEIGNIIKEAPTQVIFKDTESHRALIEKPKRFVSQNTNPSK 695

  Fly   168 -------------------------EDEDSGQAA------------------------------- 176
                                     :..|:|:|.                               
  Rat   696 YGKRECFSGRHWENLQGVRQGKLMSQPRDTGKAVVHQRPFVGRRPYRLLKYGENFGRSARLVCRM 760

  Fly   177 ------SFTCNICNNVYSERVKLTNHMKVHSAKKPHECEICHKRFRQTPQLARHMNTHTGNRPYK 235
                  .:.|.:|...:.....|..|.::|:.:||.:|..|.|.|..:.....|:..|||.:||:
  Rat   761 THQKENPYKCGVCGKCFGRSRSLIRHQRIHTGEKPFKCLDCGKSFNDSSNFGAHLRIHTGEKPYR 825

  Fly   236 CDYCDSRFADPSTRIKHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFS 300
            |..|...|:..|:.|.|||.||.|:||:||.|.:||..|:....|.:.||||.|:.|..|:|||:
  Rat   826 CRECGKCFSQSSSLIIHQRTHTGEKPYQCEECGKSFTNSSHFSAHRRAHTGENPYKCGDCEKSFN 890

  Fly   301 QLHHKNSHEKSHKRTK 316
            .......|.:.|...|
  Rat   891 NCTRFREHRRIHTGEK 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:214871 1/2 (50%)
C2H2 Zn finger 180..200 CDD:275368 4/19 (21%)
COG5048 201..>258 CDD:227381 21/56 (38%)
C2H2 Zn finger 208..228 CDD:275368 5/19 (26%)
zf-H2C2_2 221..244 CDD:463886 8/22 (36%)
C2H2 Zn finger 236..256 CDD:275368 8/19 (42%)
zf-H2C2_2 251..271 CDD:463886 11/19 (58%)
C2H2 Zn finger 264..284 CDD:275368 7/19 (37%)
C2H2 Zn finger 292..312 CDD:275368 6/19 (32%)
Zkscan2NP_001419304.1 SCAN 42..148 CDD:128708
KRAB <241..282 CDD:214630
Myb_DNA-bind_4 334..415 CDD:463994
Myb_DNA-bind_4 490..571 CDD:463994
COG5048 <766..915 CDD:227381 50/141 (35%)
C2H2 Zn finger 770..790 CDD:275368 4/19 (21%)
C2H2 Zn finger 798..818 CDD:275368 5/19 (26%)
C2H2 Zn finger 826..846 CDD:275368 8/19 (42%)
C2H2 Zn finger 854..874 CDD:275368 7/19 (37%)
C2H2 Zn finger 882..902 CDD:275368 6/19 (32%)
C2H2 Zn finger 910..930 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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