DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4854 and crol

DIOPT Version :10

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_477243.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster


Alignment Length:135 Identity:49/135 - (36%)
Similarity:74/135 - (54%) Gaps:0/135 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 FTCNICNNVYSERVKLTNHMKVHSAKKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSR 242
            |.|.||...:|.:...|||:..|:.:.||.|:.|.|.|.:...|..|:..|||..|::|.||...
  Fly   417 FRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKT 481

  Fly   243 FADPSTRIKHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFSQLHHKNS 307
            |......:.|.|.||.|.|:||.:|:::|...:.:..|::.||||.|..|.||.|:|::..|..:
  Fly   482 FTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTN 546

  Fly   308 HEKSH 312
            |.:.|
  Fly   547 HVRQH 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:214871
C2H2 Zn finger 180..200 CDD:275368 7/19 (37%)
COG5048 201..>258 CDD:227381 19/56 (34%)
C2H2 Zn finger 208..228 CDD:275368 6/19 (32%)
zf-H2C2_2 221..244 CDD:463886 9/22 (41%)
C2H2 Zn finger 236..256 CDD:275368 6/19 (32%)
zf-H2C2_2 251..271 CDD:463886 9/19 (47%)
C2H2 Zn finger 264..284 CDD:275368 4/19 (21%)
C2H2 Zn finger 292..312 CDD:275368 7/19 (37%)
crolNP_477243.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368
C2H2 Zn finger 279..299 CDD:275368
COG5048 300..723 CDD:227381 49/135 (36%)
C2H2 Zn finger 307..327 CDD:275368
C2H2 Zn finger 335..355 CDD:275368
C2H2 Zn finger 363..383 CDD:275368
C2H2 Zn finger 391..411 CDD:275368
C2H2 Zn finger 419..439 CDD:275368 7/19 (37%)
C2H2 Zn finger 447..467 CDD:275368 6/19 (32%)
C2H2 Zn finger 475..495 CDD:275368 6/19 (32%)
C2H2 Zn finger 503..523 CDD:275368 4/19 (21%)
C2H2 Zn finger 531..551 CDD:275368 7/19 (37%)
C2H2 Zn finger 559..579 CDD:275368
C2H2 Zn finger 587..607 CDD:275368
C2H2 Zn finger 615..636 CDD:275368
C2H2 Zn finger 644..664 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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