DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4854 and Zfp853

DIOPT Version :9

Sequence 1:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster
Sequence 2:XP_038945781.1 Gene:Zfp853 / 102555274 RGDID:1563095 Length:857 Species:Rattus norvegicus


Alignment Length:341 Identity:92/341 - (26%)
Similarity:145/341 - (42%) Gaps:59/341 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QPKDESLM--PTEPDFPDKIKRCTGVELS------ESPDWPNRICTSCALLLRAALKLRSLCQQT 74
            |.:.:.|.  |.||: .::.|...||||.      .|.....|:.....|.|:...:||.|.:..
  Rat   494 QQRHQQLQPPPLEPE-EEEEKEEEGVELELMPVDIRSEQELERLQEQRQLQLKLQEQLRQLEEHL 557

  Fly    75 EKDLKEQKLQEINIEIVHDEQETKKKTESRDLSKNEA--------------------TGSDSELE 119
            |:..:.::||...:|.:...|:.:::.|...|.:.|.                    |....||:
  Rat   558 EQQQQMEQLQLQQMEQLEQLQQQQQQMEQLQLEQQEVHLELTPVELDAQQEELQLELTSVQPELQ 622

  Fly   120 YEYLDSYDVTLESSEDVACSADELVSIE-----PAISAPEESVYSLSPKPVTFEDEDSGQAA--- 176
            .|.:.:..:...:|..|..:....|.::     |:::.|  :|.:: |.|       :|.||   
  Rat   623 LELVPTPGIAAPASATVVVAPPGYVVLQEVMVLPSVATP--TVVAI-PGP-------AGSAALTP 677

  Fly   177 ------------SFTCNICNNVYSERVKLTNHMKVHSAKKPHECEICHKRFRQTPQLARHMNTHT 229
                        ...|..|...:|....|..|...|:.::|:.|..|.|.|.|...|..|...||
  Rat   678 ARQRRKRRVRNRPTVCGECGKGFSRSTDLVRHQATHTGERPYLCSECGKSFSQHSNLVTHQRIHT 742

  Fly   230 GNRPYKCDYCDSRFADPSTRIKHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQY 294
            |.:||.|.||..||::.|..::|||.||.||||.|..|.:.|..|:.|..|.:||:||||:.|:.
  Rat   743 GEKPYACTYCSKRFSESSALVQHQRTHTGERPYACGDCGKRFSVSSNLLRHRRTHSGERPYVCED 807

  Fly   295 CQKSFSQLHHKNSHEK 310
            |.:.|.|......||:
  Rat   808 CGERFRQKVQIRRHER 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4854NP_650860.1 zf-AD 12..>57 CDD:285071 12/46 (26%)
C2H2 Zn finger 180..200 CDD:275368 5/19 (26%)
zf-H2C2_2 193..217 CDD:290200 8/23 (35%)
COG5048 201..>258 CDD:227381 23/56 (41%)
C2H2 Zn finger 208..228 CDD:275368 7/19 (37%)
zf-H2C2_2 221..244 CDD:290200 11/22 (50%)
C2H2 Zn finger 236..256 CDD:275368 9/19 (47%)
zf-H2C2_2 251..273 CDD:290200 12/21 (57%)
C2H2 Zn finger 264..284 CDD:275368 6/19 (32%)
zf-H2C2_2 277..301 CDD:290200 11/23 (48%)
C2H2 Zn finger 292..312 CDD:275368 6/19 (32%)
Zfp853XP_038945781.1 COG5048 <690..805 CDD:227381 46/114 (40%)
C2H2 Zn finger 693..713 CDD:275368 5/19 (26%)
C2H2 Zn finger 721..741 CDD:275368 7/19 (37%)
C2H2 Zn finger 749..769 CDD:275368 9/19 (47%)
C2H2 Zn finger 777..797 CDD:275368 6/19 (32%)
C2H2 Zn finger 805..823 CDD:275368 5/17 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.