DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4424 and Zscan4b

DIOPT Version :9

Sequence 1:NP_650859.3 Gene:CG4424 / 42390 FlyBaseID:FBgn0038765 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001172102.1 Gene:Zscan4b / 665780 MGIID:3645447 Length:505 Species:Mus musculus


Alignment Length:227 Identity:63/227 - (27%)
Similarity:97/227 - (42%) Gaps:33/227 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 PPIETEQLEPPEDEVLEEGVWSTEDPIEETPHG-PAEKERPTVLTVEML------------PAPY 167
            |..:|:.|      .:.:.::..|..:.:.|:| |.:..|.:..|...|            |...
Mouse   296 PRNKTDSL------FINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREV 354

  Fly   168 PPPASTPPPAPAGAVKGKLHVCAI-CGNGYPRKSTLDTHMRR-HNDERPYECEICHKSFHVNYQL 230
            |...|......:..|.||.|...: |          ::|.:| |.|.:.|:||.|.:.|.....|
Mouse   355 PGLQSRQEQPISDPVLGKNHEANLPC----------ESHQKRFHRDAKLYKCEECSRMFKHARSL 409

  Fly   231 KRHIRQHTGAK-PYTCQYCQRNFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMHYKTHT 294
            ..|.|.|...| ...|..||:.|...:.|..||..|.:|:|:.|.||.|.|::.:.||.|...||
Mouse   410 SSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHT 474

  Fly   295 GEKPHICQLCNKSFARIHNLVAHLQTQQHIND 326
            ||.|::|.||::.|.:......||: ..|.:|
Mouse   475 GEMPYVCSLCSRRFRQSSTYHRHLR-NYHRSD 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4424NP_650859.3 zf-AD 10..92 CDD:285071
C2H2 Zn finger 189..209 CDD:275368 3/21 (14%)
DUF45 <204..281 CDD:302795 28/78 (36%)
COG5048 210..>345 CDD:227381 42/118 (36%)
C2H2 Zn finger 217..237 CDD:275368 7/19 (37%)
C2H2 Zn finger 245..265 CDD:275368 7/19 (37%)
zf-H2C2_2 257..282 CDD:290200 11/24 (46%)
C2H2 Zn finger 273..293 CDD:275368 8/19 (42%)
zf-H2C2_2 286..310 CDD:290200 12/23 (52%)
C2H2 Zn finger 301..320 CDD:275368 6/18 (33%)
Zscan4bNP_001172102.1 SCAN <51..117 CDD:295388
zf-C2H2 394..416 CDD:278523 8/21 (38%)
C2H2 Zn finger 396..416 CDD:275368 7/19 (37%)
C2H2 Zn finger 425..445 CDD:275368 7/19 (37%)
zf-H2C2_2 437..462 CDD:290200 11/24 (46%)
zf-CHCC <441..489 CDD:295045 21/47 (45%)
C2H2 Zn finger 453..473 CDD:275368 8/19 (42%)
C2H2 Zn finger 481..499 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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