DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4424 and Vom1r42

DIOPT Version :9

Sequence 1:NP_650859.3 Gene:CG4424 / 42390 FlyBaseID:FBgn0038765 Length:345 Species:Drosophila melanogaster
Sequence 2:XP_017445028.1 Gene:Vom1r42 / 494303 RGDID:1549734 Length:306 Species:Rattus norvegicus


Alignment Length:29 Identity:7/29 - (24%)
Similarity:15/29 - (51%) Gaps:0/29 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NMMTLCRTCLQDGEAHMVSIFQTADDRLP 34
            :::|:.|||.:......|::|...:...|
  Rat   253 SVLTVLRTCSKYPVLWGVNVFTFIEISFP 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4424NP_650859.3 zf-AD 10..92 CDD:285071 6/25 (24%)
C2H2 Zn finger 189..209 CDD:275368
DUF45 <204..281 CDD:302795
COG5048 210..>345 CDD:227381
C2H2 Zn finger 217..237 CDD:275368
C2H2 Zn finger 245..265 CDD:275368
zf-H2C2_2 257..282 CDD:290200
C2H2 Zn finger 273..293 CDD:275368
zf-H2C2_2 286..310 CDD:290200
C2H2 Zn finger 301..320 CDD:275368
Vom1r42XP_017445028.1 7tm_GPCRs 10..299 CDD:421689 7/29 (24%)
TM helix 1 10..34 CDD:410628
TM helix 2 46..68 CDD:410628
TM helix 3 84..106 CDD:410628
TM helix 4 132..148 CDD:410628
TM helix 5 183..206 CDD:410628
TM helix 6 232..257 CDD:410628 0/3 (0%)
TM helix 7 267..293 CDD:410628 3/15 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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