DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4424 and Meics

DIOPT Version :9

Sequence 1:NP_650859.3 Gene:CG4424 / 42390 FlyBaseID:FBgn0038765 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster


Alignment Length:425 Identity:102/425 - (24%)
Similarity:156/425 - (36%) Gaps:119/425 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 CRTCLQDGEAHMVSIFQTADDRLPGGVSLCDKIESLSGIQIRATAKEEVLPTRICLRCKAFLTLA 75
            ||.|.:.... :|.:|.......|    :.:.:.|:  :......|.:.:|.:||..|......|
  Fly    21 CRACAEHSSI-LVDLFSKEISDPP----IWEMLNSI--LPEICRVKRDEMPQKICPTCLVAAQNA 78

  Fly    76 HKFRQICQRSNEFLREYVIKDAVEQGVVK--------------EVVQQTRP---------STPPP 117
            ..||..|::|.:|..:.:..|.....:.:              |:|....|         :..|.
  Fly    79 FHFRHKCEQSFQFFSQLLQLDKSNSNLSRSHCRRGTMNPLIPFEIVGCEDPLDTNVTKLDANRPD 143

  Fly   118 IETEQLEP--------PEDEVLEEGVW-------STEDPI-----------EETPHGPAEKERP- 155
            ::|:..||        .|.|.|:| |:       .|||.:           ||..:...:.||. 
  Fly   144 VKTDIDEPTDGKATNGQESEPLQE-VFEITMNDIKTEDEVSIQETFEDAFDEENDNNNTDSERED 207

  Fly   156 ----TVLTVEMLPAPYPPPA----------------------STPPPAPAGAVK-------GKLH 187
                ||.:.|....|:.|..                      ||.........|       .|.|
  Fly   208 SDQWTVGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYSTQKALARHVAKHKEQGDTQKPH 272

  Fly   188 VCAICGNGYPRKSTLDTHMRRHNDERPYECEI----------------------------CHKSF 224
            :|..||.|:...:.|.||.|||..|||::|.:                            |.|:|
  Fly   273 LCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHGPTLKSHMHTHDEEKGHKCPQCDKTF 337

  Fly   225 HVNYQLKRHIRQHTGAKPYTCQYCQRNFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMH 289
            :....|:.||::|||.:||.|..|.:.||..:.|..|.|.|:.|||:.|:.|||.|.....|..|
  Fly   338 YTRGNLRAHIQRHTGERPYKCPDCPQTFAKNSGLKLHSRLHKEERPFKCELCGKGFVQNQHLITH 402

  Fly   290 YKTHTGEKPHICQLCNKSFARIHNLVAHLQTQQHI 324
            .:.|.|::...|..|:|||....|::.|.:|...|
  Fly   403 LRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGI 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4424NP_650859.3 zf-AD 10..92 CDD:285071 18/80 (23%)
C2H2 Zn finger 189..209 CDD:275368 8/19 (42%)
DUF45 <204..281 CDD:302795 35/104 (34%)
COG5048 210..>345 CDD:227381 44/143 (31%)
C2H2 Zn finger 217..237 CDD:275368 7/47 (15%)
C2H2 Zn finger 245..265 CDD:275368 7/19 (37%)
zf-H2C2_2 257..282 CDD:290200 12/24 (50%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
zf-H2C2_2 286..310 CDD:290200 9/23 (39%)
C2H2 Zn finger 301..320 CDD:275368 7/18 (39%)
MeicsNP_524062.1 zf-AD 21..95 CDD:285071 18/80 (23%)
C2H2 Zn finger 242..262 CDD:275368 2/19 (11%)
C2H2 Zn finger 274..294 CDD:275368 8/19 (42%)
zf-H2C2_2 287..311 CDD:290200 10/23 (43%)
C2H2 Zn finger 302..322 CDD:275368 1/19 (5%)
C2H2 Zn finger 330..350 CDD:275368 6/19 (32%)
zf-H2C2_2 342..366 CDD:290200 10/23 (43%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
COG5048 <395..583 CDD:227381 13/43 (30%)
zf-C2H2 412..434 CDD:278523 7/21 (33%)
C2H2 Zn finger 414..434 CDD:275368 7/19 (37%)
zf-H2C2_2 426..451 CDD:290200 4/12 (33%)
C2H2 Zn finger 442..462 CDD:275368
zf-H2C2_2 454..478 CDD:290200
C2H2 Zn finger 470..486 CDD:275368
C2H2 Zn finger 500..520 CDD:275368
C2H2 Zn finger 532..552 CDD:275370
C2H2 Zn finger 559..579 CDD:275370
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440473
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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